Gene detail

Gene detail information of Glyur000203s00012910

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G17920.2	Cobalamin-independent synthase family protein
NR	XP_004502016.1	PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Cicer arietinum]
COG	YP_744604.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Granulibacter bethesdensis CGDNIH1]
Swissprot	tr\|O50008\|METE1_ARATH	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1
trEMBL	tr\|I1LXY1\|I1LXY1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G15140.1}

Sequence

Transcript Sequence

>Glyur000203s00012910.1
ATTAGGGGAAAAAAAATACAGTAGAAGTCCAAGTGAGTGAGATTCAGCGGTGGAAGGTAAGGACTAAGGGGAGAGAGAGAGAGAGAGAGAGAGAGTGAGTGGGAAGCGAAGTGAGGAGTATAAATGAACAAAGTCTCCTTTCAGTGTCTGGCGCCGTTCACATTCTCACTCTCTTCTATCTCTTTCTCCCACCATACCAACTCNCTCTCTCCCTCCTTTCTTCGCTTCTCTGTGCGTGCTTCTTCTTCTCGAGCGATGGCATCCCATATTGTTGGTTATCCCCGCATGGGACCCAAGAGAGAGCTTAAGTTTGCCTTGGAATCCTTTTGGGATGGAAAGAGTAGTGCCGAGGATCTGAAGAAGGTTGCTGNAGACCTTAGGTCTGCCATCTGGAAGCAGATGGCTGAAGTTGGAATTCAGCATATTCCAAGCAACACCTTCTCATACTATGATCAAGTATTGGACACAACAGCCATGCTTGGGGCAGTTCCTGATAGATATAATTGGAATGGTGGGGAGATTGGCTTTGATATTTACTTCTCCATGGCGAGAGGCAATGCATCTGTGCCAGCTATGGAAATGACAAAGTGGTTTGACACNAACTACCACTTCATTGTTCCTGAACTGGGTCCAGATGTTAAGTTCTCCTATGCATCACACAAGGCGGTTGATGAATACAATGAGGCCAAAGCTCTAGGAATTAATACTGTGCCTGTACTTGTGGGACCGGTGTCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCGCTTATTGACAAGATCCTTCCTGTCTACAAGGAAGTGGTGACTGAACTGAAAGCCGCTGGTGCTACTTGGATCCAGTTTGATGAACCTACCCTTGTCAAGGATCTTGATGCTCACCAGTTACAAGCATTTACTTATGCTTATGCAGAGCTAGAATCAACTGTTTCTGGTTTGAATGTTCTGATTGAGACATACTTTGCTGATGTCCATGCTGAAGCATACAAAACACTGACCTCTTTGAAGGCTGTTACTGCATATGGGTTTGATCTTGTTCGTGGAACAAAGACCCTTGATTTGATCAAGCAAGGATTTCCATCTGGAAAATTTCTTTTTGCTGGTGTTGTTGATGGAAGAAATATTTGGGCCAATAATCTCGCTACTTCGCTGAACACCTTACAGGCGCTTGGGGACATTGTTGGGAAGGACAAAGTCGTGGTTTCCACATCCTGTTCTCTTCTTCATACTGCTGTTGATCTGGTGAATGAGACCAAGCTGGACCAAGAGATTAAGTCTTGGCTTGCATTTGCAGCACAAAAAATAGTTGAAGTAAATGCCTTGGCCAAGGCATTGTCTGGACAAAAGGATGAGGTTTTCTTTTCTGGTAATGCTGCTGCCTTGGCTTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAGGCTGTCCAAAAGGCTGCTGCTGCTCTTAAGGGCTCTGATCACCGGAGGGCCACTGATGTCAGTGCCAGATTGGATGCTCAACAGAAGAAACTGAATCTTCCTATTCTTCCAACCACTACAATTGGATCTTTCCCTCAGACTGCAGATCTTAGAAGGGTTCGCCGTGAATACAAGGCCAACAAGGTCTCTGAGGAGGATTATATCCGTTTCATTAAGGAAGAAATTAACAATGTTGTGAAGCTCCAGGAGGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAGAGGAATGACATGGTTGAGTACTTCGGAGAACAACTATCTGGCTTTGCTTTCACTGCCAATGGGTGGGTGCAATCCTACGGATCCCGCTGTGTCAAACCACCCATTATCTATGGTGATGTGAGCCGTCCCAAGCCCATGACTGTCTTCTGGTCTTCAACAGCTCAAAGTTTGACCAAGCGACCTATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTTGTAAGAGATGACCAGCCTAGATTTGAAACTTGCTACCAGATTGCTCTGGCCATCAAGGATGAGGTTGAGGATCTTGAGAAAGCTGGTATTACTGTCATCCAAATTGACGAGGCTGCTCTTAGAGAAGGTTTGCCACTAAGGAAGTCTGAGGAGGCTTTCTATCTAAACTGGGCAGTTCACTCATTTAGGATTACAAACTGTGGTGTGAAGGACACTACCCAGATTCACACTCACATGTGCTACTCGAATTTCAATGACATCATTCACTCAATCATAGATATGGATGCTGATGTGATNACCATTGAGAACTCCAGATCAGATGAGAAGTTACTCTCGGTCTTCCGTGAGGGAGTTAAATATGGCGCTGGTATTGGTCCTGGTGTTTATGATATTCACTCACCAAGGATTCCACCCACAGAAGAAATTGCTGACAGAATCAACAAGATGCTTGCAGTTCTTGAAAGCAACATTCTCTGGGTCAACCCGGATTGCGGCCTCAAGACGCGCAAATACACCGAGGTTAAGCCTGCTCTCACCAACATGGTTACTGCTGCCAAACTCATCCGCAACCAGCTAGCTAGTGCCAAGTGAGTTGATATTGAGCCAACAGAGTCGTCTATGTGAGAGGATGTGCTCCAGTTGGAAAACCGGACGCTTTTTATATTTTGAATAATGTCATGATATGTAAGATTTTGTCCTGTCTTTCTCGCACATGATGGATGATCTTTTGTGCTCTCTTCATTGTAGGTAATGTGTTTTACAGTATATGAATATGCATATGAATAAGATGTTCTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00203	239865	245169	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00549	metE	EC:2.1.1.14	Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Cysteine and methionine metabolism	map00270
			Cysteine and methionine metabolism	map00270
			Selenocompound metabolism	map00450
			Selenocompound metabolism	map00450

Gene Ontology

biological_process

GO:0008652 cellular amino acid biosynthetic process

GO:0009086 methionine biosynthetic process

molecular_function

GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000203s00012910.1	PF08267.7	Meth_synt_1	47	359	2.30E-115
Glyur000203s00012910.1	PF01717.13	Meth_synt_2	476	799	1.60E-147
Glyur000203s00012910.2	PF08267.7	Meth_synt_1	11	323	2.10E-115
Glyur000203s00012910.2	PF01717.13	Meth_synt_2	440	763	1.40E-147

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	159.860
SRR1783600	control	160.664
SRR1783602	moderate drought stress	187.926
SRR1811619	moderate drought stress	187.595

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	368.286
DRR006520	Root Summer glycyrrhizin high producing strain	364.080
DRR006521	Root Winter glycyrrhizin high producing strain	108.057
DRR006522	Root Winter glycyrrhizin high producing strain	105.632
DRR006523	Root Summer glycyrrhizin low producing strain	283.138
DRR006524	Root Summer glycyrrhizin low producing strain	282.668
DRR006525	Leaf Summer glycyrrhizin high producing strain	73.828
DRR006526	Leaf Summer glycyrrhizin high producing strain	73.836

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	153.895
SRR2868004	Drought Stress (root)	161.142
SRR2967015	Control (root)	154.496

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	74.087
SRR9715740	Leaf	82.161
SRR9715741	Leaf	82.139
SRR9715739	Root	453.914
SRR9715742	Root	324.366
SRR9715743	Root	344.664

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	107.338
SRR8749028	MeJA induced 9h	145.467
SRR8749029	MeJA induced 9h	72.170
SRR8749030	Uninduced	35.528
SRR8749031	Uninduced	10.683
SRR8749032	Uninduced	19.519

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	233.953
SRR8400027	Control - Root	213.586