Gene detail

Gene detail information of Glyur000203s00012901

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	4.00E-71	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_004516106.1	3.20E-174	PREDICTED: TMV resistance protein N-like isoform X1 [Cicer arietinum]
Swissprot	tr\|O82500\|Y4117_ARATH	3.00E-70	Putative disease resistance protein At4g11170
trEMBL	tr\|A0A072V7A5\|A0A072V7A5_MEDTR	5.00E-166	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:KEH34050.1}

Sequence

Transcript Sequence

>Glyur000203s00012901.1
ATGGAATCATTGCTGAATATTGGATCAAATGATGTTAGAATCGTTGGAATATGGGGCATGGGTGGCATGGGTAAGACCACCCTTGCCACTGGATTATATGAGAAGCTATGTTCCCAATTCCAATTTGAAGGTCGTTGCTTGCTTGAAAATGTAAGGGAAGAATTAAATAAGTATGGACTCGATGTTGTACGCAAGAAACTTTTTTCTATGTTGTTAGAGGAAGAAAATCTTCGTCTTGATGCATCTCGCGGGGAAATCAAAAGCGCAAATCTCCGTGGAAGAAGTAAAGAAGCATGGAAAAGTGAAATAGAAAAGCTCCAAAAGATTCCCAATGGAACAATTCATAANATGTTAAAATGGAGTTATGATGACTTAGATCGTACTCAGAAGGACATATTTCTAGACATTGCATGCTTCTTAAAAGGATGGCCTAAAGATCATGTAACCAGTCTATTGGAAGGTTGTGATTTCTTTGCAGCAAGTGGGATAGAAGTCCTTCTAGATAAAGCTCTCATACAACTAAAACAACCATACAGTTCCCTAATAGTTGAAATGCATGATTTGATGCAAGAAATGGGACGAGAGATTGTTAATCAAGAATCAAAGGACCTTGGAAAACGAAGTCGGTTGTGGAGGAGACCCAAAGAAGTGTGTGATGTATTGAAAAATAACCAGGGAACTGAAGTTGTTGAAGGCATAATGTTGGATGGTCGCACAATGGGGGATCTATATTTGAGCTCTGATTCCTTTAAAGGGATGACTAACTTAAGATATCTTCATATCGATAATTCGTACTTTGCGAGGACAAATTTATACTTCCCTAACGGTCTTGGGTGGTTGTCAAGTAAATTGAGGTACCTTCATTGGCATGCNTTTAGTCTTGAGTCTTTGCCACCAACCTTTCGTGCTGAAATGCTTGTAGAGCTTCGAATGAGCCACAGCAAGCTTAAAAAGCTTTGGGATGGAGCTCAGGATCTTGTGAACTTAAAGGAGATTCGTCTTGATTTATCCTGTGATCTAATTGAGGTCCCAGACTTATCTAGGGCCACAAATCTCCAAAGAGTAGATCTTAGTTGGTGCGTAAGCTTGCGTCAGCTACATCCATCNATTTTAGCTCTCCCCAAGCTTACGCATCTAGATTTATCAGATTGCAAAAAGATGGAAAGCCTTAAAACCAACNTTCATNCAAAATCTCTCTGTAAGCTCAATCTTAGAGATTGTTCCTCTCTCACGGAATTCTCGGTGTCATCAGAGGAAATGACNACGCTGTGGTTGCAGGGCACCGCCATACGTGAATTGCCGTCATCCATTTGGCAAAAGCTACGTTTGGTAGAGTGCCGCAACTTACAAGTCCTCCCCAGAAACATCCAAAACCATGCNGAGCTAGAAGAGCTTTGGATAGAGGAATGCGACAAACTTGTGTCCCTACCAGCAGAGCTTCCTCAATCCCTGCAAAAGTTGGTAGCCGCTAACTGCATTTCTCTGGACACAGATTCTACTCGAGGGCCATTGCTTGAGAACATGTTACAAAGCATGTCCTACCCCCACATACAACCACCTCCTGAAGAAGAAGAAGATGATGGAAAAAAGTATTTGTATGCTTTCTTCTGCCTATCAGACCACATGTTGCTATTCTGGTGTGGTTACAACGCACAAGAAAGCGAAGGTGATCATTGCAACCTGTCATTTGAATTCAANCATTGGGATAGTGATGGCGAATGGACGGATGAGGATGAAGAATATTGGTCAACAGAGGGGATAAAAGGGTGNGGGGTCTTGCCGGTATATGCCTCGGAACTGGGGTTGGGGTTGGATGGTCGAAACAACTTCTTATTCACGCAAACAAGAGATGGAGTCGGAGGCTCTAATCATGAAAATGAAGATGACCACCAGGAACAACTTCTTACTCCCTCAAACAAGAAGAGAAGAACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00203	202699	205587	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000203s00012901.1	PF00931.17	NB-ARC	6	74	3.30E-07
Glyur000203s00012901.1	PF07725.7	LRR_3	306	324	1.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.192
SRR1783600	control	0.188
SRR1783602	moderate drought stress	0.058
SRR1811619	moderate drought stress	0.058

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.817
DRR006520	Root Summer glycyrrhizin high producing strain	1.628
DRR006521	Root Winter glycyrrhizin high producing strain	1.585
DRR006522	Root Winter glycyrrhizin high producing strain	1.490
DRR006523	Root Summer glycyrrhizin low producing strain	1.423
DRR006524	Root Summer glycyrrhizin low producing strain	1.079
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.431
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.394

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.143
SRR2868004	Drought Stress (root)	13.817
SRR2967015	Control (root)	13.361

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.075
SRR9715740	Leaf	0.110
SRR9715741	Leaf	0.005
SRR9715739	Root	0.003
SRR9715742	Root	0.094
SRR9715743	Root	0.053

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.487
SRR8749028	MeJA induced 9h	79.586
SRR8749029	MeJA induced 9h	40.995
SRR8749030	Uninduced	4.500
SRR8749031	Uninduced	19.971
SRR8749032	Uninduced	30.164

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.866
SRR8400027	Control - Root	1.220