Gene detail

Gene detail information of Glyur000203s00012897

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16990.1	6.00E-44	disease resistance protein (TIR-NBS class), putative
NR	KEH35118.1	0	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]
Swissprot	tr\|Q40392\|TMVRN_NICGU	4.00E-59	TMV resistance protein N
trEMBL	tr\|A0A072V165\|A0A072V165_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH35118.1}

Sequence

Transcript Sequence

>Glyur000203s00012897.1
GGCTTCACAACAACAATAGATTCCCCGCGTGTTGCGTACATTGACTTTGCCGGTTTGTCGGTACTAAGTCATCATGGTGGAACCTACTACGGACAGTGGCCATTGAATTTTCTTGGCTACTCCCCATTTTATATGATCTAGCTTAATCTTCAGTATTGTTGTGGTAATGCCTAACCTAATTAACCACCAAACGATGATCAATTCTTCTTCTTCTTCTTCTTCTTGTTCTGTGATGTCTCCCAAAAAATATGATGTTTTTCTTAGCTTTCGAGGGGAAGATACTCGGGGGAACATCACAAGCCATCTTCATGCTGCTTTGATGCAAAAGAGAGTGGAAACCTACATAGACTACAGGCTTGAGAAGGGAGATGAGATCTCGGCAGCACTCATCACGGCCATTGAAGAGTCACATGTAAGTGTTGTGATCTTCTCAGAGAACTACGCTTCCTCCAAGTGGTGCTTGGATGAAGTCGCCAAGATTGTCGAGTGCAAGAAGGAACGAGGGCAGGTTGTTGTACCCGTGTTCTACAAGGTTGATCCATCACATGTGAGGAAGCAGAGAGGGAGGTACGAGGTAGAGTTTGCAAGACATGAGCAAGATCTTAACACTGATCTTCACAGGGTCCACAAATGGAGGCGTGCTCTCACTGAAGCTGCCAATTTGGCTGGCTGGGACTCNCTAACTTATACTTACAGGACTGAATCTGAATTTATTAAGGATATTGTTAAAGACATTTTACAAAAANTGGATCTCATATACCCAGTTGAATTGAAGGGACTGGTTGGAATTGAAGAAAATTATGTCGGGGTTGAATCATTATTGGAAATTGGCTCAAGAGAAGTTCGAATGATTGGGATATGGGGCATGGGGGGCATAGGCAAGACCACCCTGGCAATTGCTTTACATGCCAAACTGTCTTCTCAATTTGAAGGTCACTGCTTTCTGGCTAGTAGTCTTGTGAATTTGAAGGAAATTGACCTTAGATCCTGCGAACGNCTGGTTGAGGTCCCAGACTTACACATGGCGACAAGTCTGGAGGAGTTGACCCTTGCTCAGTGCAAGAGTTTGCGTCGAGTTCATCCATCCATCTTGTCCCTCCACGAGCTGAAGAATCTGGACTTAGAAGGCTGCACAGAGCTGGGAAGCCTCCAAACCGGGAATCATTTAAGGTCTNTGATCAACCTCCGTCTCAGCAACTGCTCATCCCTGAGTGAATTTTCAGTCTCCTCAGAGCAACTCGAGAGGGTGTGGTTAGACGGCACAATCATCCAAGAATTGCCCCAATCAATTTGGCGTTGCAAGAAGCTTAAGCTCNTTGATCTCCAAGGCTGTGACAATCTTCACGGTTTTGGAGGAATTGGAATTGGATCTGGATCATCATCATCATCATCTCTTAATAGTCTAGTCCTTTCCGGTTGCAAACAGCTAGATGCACCGAACCTGTGTTTTAGCCTCGATGCCTTACAATCTTTAACGTCGTTGGATTTGAGGAATTGTTGCAACTTGCAGACACTCCCNGATAGCATTGCCCTGTTGTCATCGTTGCAGAGGTTAAGCCTAAGCGGGAGCAACGTCGTGAGCCTGTCGTCACCAAACATATTGAACATGCTTTCGCAGCTGAAAGAGCTTCTGTTAGACGATTGCAGGGAGCTGGTGTCTCTGCCACACGAGCTTCCACCGTCACTGCGAGTGTTGAGTGCCGTTAACTGCACTTCTCTGGAGACAACACATCTCACTCCGTTGCCTTTCGATCATAGATCTGTACCTCAACCACGCCCTCAATCTGTGTTCTTCCCTGGAACTCGAGTTCCGGAGAGTTTTAGTTTTCGTGCTCAAGGTGGTGCAAATATGGTAACCATTCCGCATCTTCCAACACCGGGCTTATACGGTTTTGTATTTTGCCTCATCCTTTCGCGGTCACCTCCAAAGTACGGATACGTTGGGTTTTCCGTTTACCAATGTTCCAGAAGGATCGGTGGCAAGGGTACCTTCCTGGGTAACCTGCATTTGGATTCGGATCATGTGTTTCTTTGGTATCTTGACCTCAAAACTGGTAAGGGAGACATTTCTTTATATGGGCAATTACAAGAAAGTGGGGCGTGGGATCATCCTTACAACTTATCGTTTGAATTCTTACTTGAAGACGGGGATGATAGAGAATTATGGTCAGCCAAGGGGATAACAGGGTGCGGGGTCTGCCCNCTCTATGCACACTCTCAAGTACTTCAACCTCAACACAATGGGTTGGGTAGTTCCAAGGTGGATAATATTGTTCAATTAGAATCCAACGTCAGTACTTCTAAAGAGATTATTGGATCTAATCTTAGAAATGAAGATGACCAGACTAAGAAATTGCAATTGCAGCAGCACCAAACAATTACCACAGGCGCCCTGCAGGATGAGAAAGTGGACTCAAATGAAAACAACTCCTGTCATAGCTTCACAGCAAGTGGTCGCAAGAGAAAACCACAAAGTTTCAAGGAAGAGGATTGCTATACAAACTCGATACCAAAAGATCAAATTATCCTCTATGACACTCCAAGAGCTTCCAACATGGATTCAAATCAAACTATTGAAGTGATGGTGTCAGAAGAGAAAGAGTTGACCAACAATAAAATCGACAAACGTTCTGAGCCAGTTCACACTCTNGTGGAGATTGAAAATCCGCAGATTGAACCAGATCATTGGGATCCAATTGCCGAGCTCGAAAGCTTGTTATGTGATAGTTATNAGTTGTCTCCCATGTCAACAACTGTTTCTTCAGTCCAACAGGGTCCAAATGTGGCAGCTATCCTTGAAAATTTAGAGACCCTTNTGGAGACTCCCCTTGAGACTATCTCTTCAGATGATGGAGTGAAGNAACAGTTCCATCATGTTTTGGAACAGCTTGGCCAATTTGAAGACCAAATCCCTGTNAGGCTTCATCCTGTGATTTGCAAGTTAAAAACTTTCATGGAAGGTACTGTTGAGGTCAGGNTTGTGACCGCCCAAAAAACTATCCAAGATTATGATCAGCTGCTCCAGTCAAGGTCTCTTCTCTCAACGCAATTGGAAAGTGCCAAAGCCCGNAAAGACCGAATCGATTCCAAAGTCTTTCAGGGTAAAACACGGTTAGAGANTATCAACTCCGAGATTGTCGAGCTGGAACAAAGATTAAGTGGTCTTGTTGAGAGTAGAGACAAGCTGAAGAGGGAGTTGGGGTACTGTGACGTGGAAGATAGCAAGCTAAAGTCTGAGGTTGAACAATGGGTACGAGAATGCAAGGATGTCGTCATGGGTTTGAAGAAGTCTGGGAGTTCTTACAAAGAGGCCCTGACCAATAAGAAGAGAGCTGAAAATGAATGGGCTGANCTTAAAAAGAAATTTGAAGAGCCGGATGCCTTTGCCATTAAGTTCCCAAATCAATTTAAAGTTTATTGTTCTAAATCAGAAGTATGGGATGGTGGAGTTGGATTTGTATCTAAGGAAATGATCCAAACACATTGCCCTGCACCAGCACCGGATATTAAGATACNAAGGTGTGGACCACCTCCCATGAACAAGGCTATGGCTGCTCACCTTGAAGCTCTTGGATACAGTCCCCAAATGCAGTTTCAGTTCTAG

Protein Sequence

>Glyur000203s00012897.1
MPNLINHQTMINSSSSSSSCSVMSPKKYDVFLSFRGEDTRGNITSHLHAALMQKRVETYIDYRLEKGDEISAALITAIEESHVSVVIFSENYASSKWCLDEVAKIVECKKERGQVVVPVFYKVDPSHVRKQRGRYEVEFARHEQDLNTDLHRVHKWRRALTEAANLAGWDSLTYTYRTESEFIKDIVKDILQKXDLIYPVELKGLVGIEENYVGVESLLEIGSREVRMIGIWGMGGIGKTTLAIALHAKLSSQFEGHCFLASSLVNLKEIDLRSCERLVEVPDLHMATSLEELTLAQCKSLRRVHPSILSLHELKNLDLEGCTELGSLQTGNHLRSXINLRLSNCSSLSEFSVSSEQLERVWLDGTIIQELPQSIWRCKKLKLXDLQGCDNLHGFGGIGIGSGSSSSSSLNSLVLSGCKQLDAPNLCFSLDALQSLTSLDLRNCCNLQTLPDSIALLSSLQRLSLSGSNVVSLSSPNILNMLSQLKELLLDDCRELVSLPHELPPSLRVLSAVNCTSLETTHLTPLPFDHRSVPQPRPQSVFFPGTRVPESFSFRAQGGANMVTIPHLPTPGLYGFVFCLILSRSPPKYGYVGFSVYQCSRRIGGKGTFLGNLHLDSDHVFLWYLDLKTGKGDISLYGQLQESGAWDHPYNLSFEFLLEDGDDRELWSAKGITGCGVCPLYAHSQVLQPQHNGLGSSKVDNIVQLESNVSTSKEIIGSNLRNEDDQTKKLQLQQHQTITTGALQDEKVDSNENNSCHSFTASGRKRKPQSFKEEDCYTNSIPKDQIILYDTPRASNMDSNQTIEVMVSEEKELTNNKIDKRSEPVHTLVEIENPQIEPDHWDPIAELESLLCDSYXLSPMSTTVSSVQQGPNVAAILENLETLXETPLETISSDDGVKXQFHHVLEQLGQFEDQIPVRLHPVICKLKTFMEGTVEVRXVTAQKTIQDYDQLLQSRSLLSTQLESAKARKDRIDSKVFQGKTRLEXINSEIVELEQRLSGLVESRDKLKRELGYCDVEDSKLKSEVEQWVRECKDVVMGLKKSGSSYKEALTNKKRAENEWAXLKKKFEEPDAFAIKFPNQFKVYCSKSEVWDGGVGFVSKEMIQTHCPAPAPDIKIXRCGPPPMNKAMAAHLEALGYSPQMQFQF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00203	161050	173948	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007165 signal transduction

GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000203s00012897.1	PF01582.15	TIR	30	161	1.70E-34
Glyur000203s00012897.1	PF00931.17	NB-ARC	217	263	2.10E-06
Glyur000203s00012897.1	PF00175.16	NAD_binding_1	1068	1128	0.0002

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.322
SRR1783600	control	13.286
SRR1783602	moderate drought stress	13.256
SRR1811619	moderate drought stress	12.844

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.628
DRR006520	Root Summer glycyrrhizin high producing strain	5.505
DRR006521	Root Winter glycyrrhizin high producing strain	7.383
DRR006522	Root Winter glycyrrhizin high producing strain	7.345
DRR006523	Root Summer glycyrrhizin low producing strain	5.146
DRR006524	Root Summer glycyrrhizin low producing strain	5.309
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.414
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.475

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.644
SRR2868004	Drought Stress (root)	4.856
SRR2967015	Control (root)	5.853

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.534
SRR9715740	Leaf	25.975
SRR9715741	Leaf	36.114
SRR9715739	Root	1.981
SRR9715742	Root	15.708
SRR9715743	Root	12.853

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.309
SRR8749028	MeJA induced 9h	17.148
SRR8749029	MeJA induced 9h	7.202
SRR8749030	Uninduced	7.815
SRR8749031	Uninduced	1.677
SRR8749032	Uninduced	2.502

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.164
SRR8400027	Control - Root	12.926