Gene detail

Gene detail information of Glyur000203s00012890.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G45140.1	lipoxygenase 2
NR	XP_003519005.1	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic [Glycine max]
Swissprot	tr\|O24370\|LOX21_SOLTU	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|I1JFT4\|I1JFT4_SOYBN	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000203s00012890.1
ATGACACTGCAGAATCCACATGTCCACCGCCGATCATTATTTAACAGCGTTTACCCCTTTTATACACCCTGCAGGAAAGTTACTAGCAGCAGCAATAGCAGTGGGTTGTTGTTGAACCTGAGTAATACTCGGGCACGGAAAAGGGTTGACATAGGGTGTGTGTCTCCGCGCGTGAGAGCTCACGTGATCATGGCAAGAAGCAGCAACACCAAATTATCTCAGAGTGTGAAAGCCGTTGTGACTGTGAAGCAAAGTAGTGGTGGTGGCCTCCTAACGAACCTCGTTAGTGGTATTGTTGGGAAACACATGGTTTTGGAGCTGTCTTATTTGCCATCACAAACACCAATTGGATTGAGAAGGCTGAGAGAAGAGGAGCTGGCGTTGCTGAGAGGGAATGGAGAAGGAGAGCGCAAGAGCTCTGACAGAATATATGACTATGATGTGTACAATGACCTTGGTGANCCTGATACCAACATTGACCTCAAAAGACCTGTTCTTGGTGGCACCAAACAGCATCCATATCCAAGACGGTGTCGTACTGGTAGAAAGCATTCTAATGCAGGTTTGACTTTCTATGTTCCTCGTGACGAGGCATTTGCTGAGATAAAGCAGATACAATTCGCAACAACCACAGTATCCTCAGGACTAAGTGCAATCTTGGAATCCTTAGATGCAATTCTCACTAACCAAGATCATGGATTTGACAGCTTTGAAGACATAGACACACTTTACAAAGAAGGATTTGATTTACCAACTCTTGACAACTCCAATGGGTTGACATTGCTCCAAAGAGTCCTTCCCAAGTTCTTCAAGGCTGCTAATGATCACCAAAACCTTTTGCGCTTTGATACCCCAGAAGCATTTAAAAGGAACAAATTCTTTTGGCTATCAGATGAGGAATTTGCTAGGGAGACTTTGGCAGGTGTCAACCCATATAGCATCCAATTGGAATGGCCTTTTAGAAGTAAACTAGAACCCGAAATCTATGGTCCACCAGAATCAGCTATCACCAGAGAAGTCATCGAGTCACAGATAATTGGTTATTCCACAGTTGAAGAGGCCATTAAAGAGAAGAAATTGTTTGTATTAGACTACCATGATTTATTTTTACCATATGTAAGCAAAGTGAGAGCGATTAAGGGCACCACACTATATGGATCACGAACAGTGTTCTTCCTCACCAAACAAGGCACATTGAAGCCACTAGCTATTGAGCTCACTAGACCACCTATTNATGGCAAGCCACAGTGGAAGCAAGTCTTCACACCTGCTTCAGGTTCCACCAATCTCTGGCTTTGGAGGCTTGCCAAAGCTCATGTTCTTGCCCACGATTCTGGTTACCATGAACTTGTAAGCCACTGGTTAAGAACTCACTGTGCTGTAGAACCCTTTGTCATTGCAACAAATAGGCAACTTAGCACCNTGCATCCAATCTACAGATTACTACATCCACATCTGAGATATACCATGGAGATCAATTCCCTTGCCCGTGGAGTGCTTATCAGTGCAAATGGGGTCATTGAATCCTCATTCTCTACTAGAAAATATTCAATGGAACTAAGCTCCGTGGCATATGATAAGCTTTGGCAGTTCGATTTGCAGGCACTTCCAAATGATCTTATTGATAGAGGAATGGCTGTGAAAGATCCTAATGCACCACATGGACTAAAGCTAACAATTGAAGACTACCCTTTTGCCAATGATGGTCTTCTTATATGGGATGCCATTAAACAATGGGTCACAGAATATGTCAACCATTACTATCCAAGCTCAAGCATCATAGAATCTGACCAAGAGCTCCAAGCATGGTGGACTGAAATCCGAACAGTGGGACATGGAGACAAATCTGAAGAACCATGGTGGCCAAGTCTGAAAACACCAAAAGACCTTATTGACATCATCACCACTATAGCTTGGGTAGCATCTGCTCATCATGCAGCTGTGAACTTTGCCCAATATACTTATGGAGGTTATTTCCCTAACCGACCAACAATTGCTAGAAACAAAATGCCTACAGAAGACCCTTCAGAGGAAGAGTGGGAAAAGTTTCTGAACAACCCTGAGCAGACCCTTTTGGAGTGTTTCCCATCACAAATCCAAGCAACCTTAGTGATGGTCATTTTGAATTTATTATCAGATCATTCACCAGATGAGGANTACTTGGGGCAATACATGGAGTCATCATGGGCTGAGAATCAAAATATAAAAGCAGCCTTTGAGANGTTTAATGGGAGAATGAAGGAGATTGAAGGTATTATAGACTCAAGGAATGCAGATAGTAATTTGAAGAATAGAAATGGAGCTGGGGTAGTGCCTTATGAGCTAATGAAGCCATTTTCAGGGCCTGGAGTCACNGGAAAGGGAGTTCCATATAGCATATCTATTTAAATATTGATGATTTTAAGCAGAATATTCATNAACATGAAAAATATTATCATGTGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00203	89583	97344	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000203s00012890.1	PF00305.14	Lipoxygenase	118	778	5.30E-267

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.129
SRR1783600	control	0.124
SRR1783602	moderate drought stress	0.127
SRR1811619	moderate drought stress	0.141

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.044
DRR006520	Root Summer glycyrrhizin high producing strain	0.043
DRR006521	Root Winter glycyrrhizin high producing strain	0.091
DRR006522	Root Winter glycyrrhizin high producing strain	0.088
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	71.368
DRR006526	Leaf Summer glycyrrhizin high producing strain	70.563

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.284
SRR2868004	Drought Stress (root)	0.375
SRR2967015	Control (root)	0.331

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.522
SRR9715740	Leaf	51.647
SRR9715741	Leaf	48.565
SRR9715739	Root	0.000
SRR9715742	Root	0.127
SRR9715743	Root	0.200

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.029
SRR8749028	MeJA induced 9h	0.082
SRR8749029	MeJA induced 9h	0.025
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.015
SRR8749032	Uninduced	0.070

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.095
SRR8400027	Control - Root	0.115