Gene detail

Gene detail information of Glyur000203s00012889.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G45140.1	lipoxygenase 2
NR	KHN46337.1	Linoleate 13S-lipoxygenase 2-1, chloroplastic [Glycine soja]
Swissprot	tr\|O24370\|LOX21_SOLTU	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|I1NE46\|I1NE46_SOYBN	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000203s00012889.1
ATGGAGTGCGTGTCTCAATGTTTGAATGCTGTGATGGCAAGTAGCAGCAGCGGCTGCAACAACACAGTGAAAGCTGTTGTCACTTTGAAGCATAGTAATGATGGCGGGCTTCTACGGAATCTTCTAGATACTTGTTTTGGGAAAACACTTGTTTTGGAGCTTGTCAGCGATGAGCTTGATCATGAAACGAACGCAGAGAAAGAGACAATAAAAGGTTCGGCTCAATACATCGAGGAGAACGAGGATNGTGTGCGGTATGAGGCCAAATTTGAGTTATCCACAGATTTTGGGAACGTGGGTGCCATACTAGTTGAGAATGAGCACCACAAGGAGGTGTTTCTCAAGAGTATACTCCTTCATGGCTCCCCTGATGCGCCTGTCAACTTCACATGCAATTCATGGATTCAGCCCAAGCATGATAGTCCTGTGAAGAGAGTTTTCTTCGCTGACAAGTCATACTTGCCATCACAAACACCAAGAGGGTTGCAAAGGTTGAGAAAAGAAGAGCTAGTGCAGCTAAGAGGGAATGGNGAAGGAGAGCGCAAGAGCTCTGACAGAATATATGACTATGANGTGTACAATGACCTTGGTGATCCTGATACCAACATTGANCTCAAAAGACCTGTTCTTGGTGGCACCAAACAGCATCCATATCCAAGACGGTGTCGCACTGGTCGAAAGCATTCTGATGCAGATCCACTGTATGAGAAAAGGAGTTCAAGTTTCTATGTTCCTCGTGACGAGTCATTTGCTGAAATAAAGCAGACACAGTTCAAAACTTCTGCAATATCCTCAGGGCTGAGTGCAATTTTTNAATCCTTAGACACAATTCTCACTGACCAAAATCTAGGATTTGTAAACTTTGAAGACATAGAGACGCTGTACAAAGAAGGATTTCATTTACCACCTCTTAAATCCAATGGGTTAACATTGCTCCAGAAAATCATCCCCAAGTTGATCAAGGTTGCTAATGATAGCCAAAATATTTTGCGCTTTGACACCCCGGAACCATTTAAAAATGTGGAGTTTGCTAGGGAGACTTTGGCAGGTGTCAACCCATATAGCATCCAATTGGTCAAGGCAAGAATTGCTACAAATATTCAGTTTACTCTTTTCACAGAATGGCCTTTGACAAGTAAACTAGATGCCCAAATCTATGGTCCACCAGAATCAGCAATTACCAGAGAAGTCATTGAGCCACAAATAATCACTTATGGCACAGTTGAAGAGGCTATTAAAGAGAAGAAGTTGTTCAAGCTAGACTACCATGATTTATTCTTACCATATGTAAGCAAAGTGAGAGAGATTAAGGGCACCGCACTATATGGATCACGAACACTGTTCTTCCTCACCAGTCAAGGCACATTGAAGCCATTAGCTATTGAGCTCACTAGACCACNTATTGAAGGCAAAGCACAGTGGAAGCAAGTCTTCACACCGGCTTCTGATTCGATCAATCTCTGGCTTTGGAGGCTTGCAAAAGCTCATGTTCTTGCCCATGATTCTGGTTATCATGAACTTGTAAGCCATTGGCTAAGAACTCACTGTGCTGTAGAACCCTTTGTCATTGCAACAAATAGGCAACTTAGCACCATGCATCCAATCTACAAATTACTACATCCACATCTGAGATACACCATGGAGATCAATTCCCTTGCCCGTGACGTGCTTATCAGTGCAAATGGGGTCATTGAGTCCTCATTCTCTACTAGAAAATATTCAATGGAATTAAGCTCCGTGGCATATGATAAGCTTTGGCAGTTTGATTTGCAGGCACTTCCCAATGATCTTATTGATAGGGGAATGGCAGNGGAAGATCCTAACGCACCACATGGCCTAAAGCTAACAATTGAAGACTACCCTTTTGCCAATGATGGTCTGCTTATATGGGATGCCATTAAACAATGGGTCACTGAGTATGTCAACCATTACTATCCAAGCCCAAGCATGATAGAGTCTGACCAAGAGCTCCAAGCATGGTGGACCGAAATCCGAACGGTGGGACATGGAGACAAATCTGAAGATCCATGGTGGCCAAATCTCAAAACACCAAAAGACCTTATTGACATCATCACCACTATAGCTTGGGTAGCATCTGCTCATCATGCAGCTGTGAACTTTACCCAATATGCTTATGGAGGCTATTTCCCTAACCGACCCACAATTGCTAGAAACAAAATGCCTACTGAAGACCCTTCAGAGGAAGAGTGGGTAAAGTTTCTGAACAAACCTGAGCAGACCCTTTTGGAGTGTTTTCCATCACAAATCCAAGCAACCTTAGTGATGGTCATTTTGAACTTATTATCAGATCATTCACCAGATGAACAGTACATTGGGCAATACATGGAGCCATCATGGGCTGGGAATCAAACTATAAAGGAATCCTTTGAAAGGTTTAGTAGGAGATTGAAGGAGATTGAAGGCATTATAGACTCAAGGAATGCAGATAGTAATTTAAAGAATAGGCATGGAGCTGGGATAGTGCCTTATGAGTCATTGAAGCCATTTTCAGGGCCTGGTGTCACTGGAAAAGGNGTCCCATATAGCATATCCATTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00203	82893	87586	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000203s00012889.1	PF01477.18	PLAT	56	148	7.70E-13
Glyur000203s00012889.1	PF00305.14	Lipoxygenase	161	835	1.90E-259

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.270
SRR1783600	control	0.249
SRR1783602	moderate drought stress	0.190
SRR1811619	moderate drought stress	0.180

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.084
DRR006520	Root Summer glycyrrhizin high producing strain	0.084
DRR006521	Root Winter glycyrrhizin high producing strain	0.174
DRR006522	Root Winter glycyrrhizin high producing strain	0.170
DRR006523	Root Summer glycyrrhizin low producing strain	0.474
DRR006524	Root Summer glycyrrhizin low producing strain	0.475
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.206
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.121

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.224
SRR2868004	Drought Stress (root)	0.239
SRR2967015	Control (root)	0.333

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.151
SRR9715740	Leaf	0.332
SRR9715741	Leaf	0.160
SRR9715739	Root	0.005
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.069
SRR8749028	MeJA induced 9h	0.217
SRR8749029	MeJA induced 9h	0.214
SRR8749030	Uninduced	0.248
SRR8749031	Uninduced	0.508
SRR8749032	Uninduced	0.234

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.268
SRR8400027	Control - Root	0.299