Gene detail

Gene detail information of Glyur000203s00012887

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23330.1	2.00E-103	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_002278166.1	0	PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Vitis vinifera]
Swissprot	tr\|Q9LW63\|PP251_ARATH	7.00E-122	Putative pentatricopeptide repeat-containing protein At3g23330
trEMBL	tr\|A5AJ01\|A5AJ01_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN82226.1}

Sequence

Transcript Sequence

>Glyur000203s00012887.1
ATGGACCTTCTTCAATCCACAACGCTCATTCGATTCTTCCCATCACCACAAAACCCCACCACCACCAACTCCTTCGTCCATCCTCTTCCCCTTCGTTATCTCCGAAGCACAGCAACAACATCATCAGCACCCATCTCACTCACCAACAACAACCAAACCCACAANGTGTTCGACGAAAGTCCCCAATTAGCATGGAACACATTGATCCACACCCANCTCNCCAACAACAACCTCCCCCTCGCTCTCTCCACCTTAACCCAAATGCTNCACTTGGGCTTCCCCCTAGACACTTACACCTTCCACCGCCTCCTCCACGCCNCCCCCCACTTGTNAATCCTCGCNAAACANCTCCACACCCATGCCCTCAAACTCCNCCTCAACCTCCATCATGATAATGGGGTTTCCAACGAATGCCAATTGGACCCTTTGGAGTGTGATGTCTTGACAAGTAACTTGCTTTTGAAAATGTACATTGATTGTGACAACATAAAGGATGCACGCTTGGTGTTTGATCATATGCCTTATAGGGATGTTGTTTCGTGGACTTCCATGATTAGGGGTTATGTGGAGAAAGGAGGGTTCTTTGAGGCTTTTGAGTTGTTCCGGAGGATGAACTTGGATAATGATGGATCGTTGGAACCGGATTCGGTGTTGATATCCACTTTGCTTCCTGCTTGTGGAGGGATTGGTTCGGGTATACATGGTAGAGAGGTTCATTGCTACTTGCTCAGAAATGGGATGATGGAGTGTGATGTTGTGATGAGTCACTCGCTTTTGAAGATGTACATTGATTGCGATGGCATAAGGGATGCTAGGTCTGTGTTTGAGATGATCGATTGTAAGGATGTTGGTTTGTGGACATTGATGATTCGTGGTTATGTGAAGAAAGGGAAATTCAGTGAGGCTTTCAGGTTGTTTCGGAAGATGAACTNGGATGGGTTGAAGCCAAATCCGGTGTCTATTGCCAGCATTCTTCCTGCATGTGCGAGAGTTGCTTCACACAAACATGGTAGGGAGATTCATGGATACTTGCTCAGAAATGGGGTTGAGTTTGATCTCACGGTTAAGAATGCGGTTATGGACATGTATGCGAAATCGGGAGCTATCAGTTGTGCTGAGAATGTTTTTGCTGAAATGAATGAGAGAGACGCTCTTTCGTGGACCATGATGGTATTGGGTTATAGTTTGAATGGTCAAGGAAAGCATGGAGTTGATTTGTTTAGACAGATGGAGAAGAACTCAGAGGAACATTTAGATGACACTGCCTATGCTGCTGCACTTCATGCTTGCAGCACCGCACGCATGGCTGAGGAAGGGAAAGTTTACTTCAACCATATTATGGCACCCACGGTTGCTCATTGTGCTCTGAAGGTGTCTCTGCTGGCGCGTTGTGCACTGTTTGATGAGGCGAGGATCTTTATCAGGGAACAGAAGATTGAGAATCATCCCGAGGTACTGAGAAAACTGCTAGAAGGGTGTAGGATTCACGGTGAATATGATCTGGGAAAGCAAGTTGTTGAACAGCTTTGTGAGCTGGAGCCTCTAAATGCTGAGAACTACGTGATGCTTTTGAATTGGTATGCAGGAAGTGGGAAATGGGACATGGTGGACAGGTTAAGGGAATCAATGAGAGACAATGGTTTGAAACCCAAAAAGGCTTATACTTGGACATTGTTCAGGAAAAAAGTTCATTTATTTGGAACTGGGGATGTCTCTCATCCAAGATCAACGAAAATATATTCAGCAGTACAGGGTTTCATGGAGAAGATGAGAACCAAAGGACTTGAACCAAAGTGGGATTTCAGTCTTCATGATGTAGATGAAGAGAGGGAGTGCACTCTTGTTGGGCATAGTGAACTCTTGGCACTTTCTTTTGGGCTCATCAGTTCACAGGTGGGACCTATCCTGCTTGAGAAAAATTCTCGGGTGTGTCGTGGATGCCACGATTTTGCAAAGTTTATTTCTAAGTTGAGGAGAAGAGAAATCATCCTCAAGGATCCAAATGTATTTCACCATTTTAAAGACGGGTATTGTACATGTGAGGACTGTTGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00203	79313	81367	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000203s00012887.1	PF01535.15	PPR	179	204	3.70E-06
Glyur000203s00012887.1	PF13041.1	PPR_2	281	329	6.00E-11
Glyur000203s00012887.1	PF01535.15	PPR	357	382	0.069
Glyur000203s00012887.1	PF01535.15	PPR	386	413	0.0037
Glyur000203s00012887.1	PF01535.15	PPR	520	548	0.38
Glyur000203s00012887.1	PF14432.1	DYW_deaminase	571	674	1.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.360
SRR1783600	control	1.325
SRR1783602	moderate drought stress	1.448
SRR1811619	moderate drought stress	1.393

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.137
DRR006520	Root Summer glycyrrhizin high producing strain	1.073
DRR006521	Root Winter glycyrrhizin high producing strain	1.426
DRR006522	Root Winter glycyrrhizin high producing strain	1.405
DRR006523	Root Summer glycyrrhizin low producing strain	1.558
DRR006524	Root Summer glycyrrhizin low producing strain	1.831
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.263

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.826
SRR2868004	Drought Stress (root)	1.955
SRR2967015	Control (root)	1.977

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.557
SRR9715740	Leaf	3.466
SRR9715741	Leaf	2.942
SRR9715739	Root	0.516
SRR9715742	Root	1.793
SRR9715743	Root	1.574

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.082
SRR8749028	MeJA induced 9h	2.932
SRR8749029	MeJA induced 9h	2.415
SRR8749030	Uninduced	0.588
SRR8749031	Uninduced	0.552
SRR8749032	Uninduced	0.330

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.487
SRR8400027	Control - Root	2.639