Gene detail

Gene detail information of Glyur000203s00012885

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31980.1	1.00E-57
NR	XP_003601320.1	0	hypothetical protein MTR_3g079390 [Medicago truncatula]
Swissprot	tr\|Q9SD53\|Y3720_ARATH	4.00E-46	UPF0481 protein At3g47200
trEMBL	tr\|G7J627\|G7J627_MEDTR	0	DUF247 domain protein {ECO:0000313\|EMBL:AES71571.1}

Sequence

Transcript Sequence

>Glyur000203s00012885.1
ATGAAGAAAATGGAGTGGCAAGAAAATGGTTTAACTGAGTCTGAAAGGGAAAATGAAAGTAAAGATTTGATAATTCACATGGAAGCCATGTTAGAAAGTGTGGAACTTCCCTTAGTGTCACGTTGTTGTATATACAANGTACCTCAGAAAATCCGCAAACTGAATGAAGAAGCCTACACTCCTAGCATTGTTTCCATTGGTCCATTTCACCATGCAGACAAGAGATTAGAATCAATGGAAGATCTCAAATTGAGGTACCTCAAGAGTTTCCTCGAAAGGACTCATCAGAAGGGGTTAAGGGATTGCATTGGATACATAAAAAAATCAGAAGAAATCATTAGATGCAGTTATTCAGAGACCATTGAACAAAACAGTGATGATTTTGTGAAGATTATTTTGACTGATGCTTGCTTCATAATTGAGTATTTTCTTAGGTCNCTAGAGTGGCCACAAGAAGACCCTTTGTTATCAAAACCATGGCTTAGGTGTGATGTGAAGCTTGATCTGATATTACTTGAAAACCAGCTTCCATGGTTTGTCCTTGAAGACTTGTTCAACCTAACAGAACCATGTTGCATCAATGGTGAGGTTTCCTCATTTTTTGATGTTGCTTTCCACTATTTTAAGGTCCACTTCCTGCAAAGCATATTGCCTAGTGGAGCAAATAATAGCAAATTCACCATCAACTATTTTCATGAGCACTACCAACAATACATAATGAAACCTGATCAAGTTAGCATGCAATTGCATAACCTCACTGATCTGCTAAGGATATTTTACTTACCACCTGATAGGCTACCAAAGAGAGAGAGAGAAACAGTGAAGCATCTATATAGTGCAAGCCAGCTAGTTGAGTCAGGTGTGAAGCTTCATGTTGGNGATGAAGACCAAAGTGTGCTTGAGTTGCAATTCTCAAAGGGNGTGCTCACAATACCAAGGTTTGAAGTTTGTCACTGGACTGAGACTCTAATAAGAAATGTGGTAGCATTTGAGCAATGCCATTATCCATTTCAGACTTACATCACTGATTACATAATCCTCTTGGATTTCCTTATTGATACTAGCCAGGATGTTGATACACTTGTTGACAAGGGAATCATGACTAACACATTGGGGGATAGCATTGCAGTTGCTAANATGATTAACAACCTGTGCCTAAATGTTGTCCAGGAGAATATTAGTGGTGGTTATATTTTGCTCTGTAGGAAATTGAATTGCTTTTATGAGGACCCTTCCCACAAATATAAGGCAATCTTCATACATGACTACTTCAGCACTCCTTGGAAAATAGCATCTTTCATAGCTGCNATTGTACTACTTTTGCTTACCTTAATTCAAGCCACATGTTCTGTCATCTCATTATTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00203	67247	68614	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000203s00012885.1	PF03140.10	DUF247	44	443	1.10E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.235
SRR1783600	control	2.240
SRR1783602	moderate drought stress	1.200
SRR1811619	moderate drought stress	1.120

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.599
DRR006520	Root Summer glycyrrhizin high producing strain	0.472
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.009
DRR006524	Root Summer glycyrrhizin low producing strain	1.161
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.333
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.767

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.372
SRR2868004	Drought Stress (root)	1.274
SRR2967015	Control (root)	0.870

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.467
SRR9715740	Leaf	3.841
SRR9715741	Leaf	6.384
SRR9715739	Root	0.109
SRR9715742	Root	2.070
SRR9715743	Root	0.903

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.606
SRR8749028	MeJA induced 9h	0.880
SRR8749029	MeJA induced 9h	0.730
SRR8749030	Uninduced	0.223
SRR8749031	Uninduced	0.224
SRR8749032	Uninduced	0.333

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.651
SRR8400027	Control - Root	1.336