Gene detail information of Glyur000203s00012884 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G21060.1 | 4.00E-141 | Glyceraldehyde-3-phosphate dehydrogenase-like family protein |
| NR | XP_003601314.1 | 0 | Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] |
| COG | YP_005440882.1 | 1.00E-90 | homoserine dehydrogenase [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| Swissprot | tr|P49079|AKH1_MAIZE | 3.00E-48 | Homoserine dehydrogenase (Precursor) |
| trEMBL | tr|B7FM35|B7FM35_MEDTR | 0 | Homoserine dehydrogenase {ECO:0000256|PIRNR:PIRNR036497, ECO:0000256|RuleBase:RU000579} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00203 | 59750 | 65206 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000203s00012884.1 | PF00742.14 | Homoserine_dh | 171 | 239 | 1.20E-20 |
| Glyur000203s00012884.1 | PF00742.14 | Homoserine_dh | 262 | 391 | 8.50E-24 |
| Glyur000203s00012884.2 | PF00742.14 | Homoserine_dh | 171 | 369 | 8.10E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.688 |
| SRR1783600 | control | 11.373 |
| SRR1783602 | moderate drought stress | 9.865 |
| SRR1811619 | moderate drought stress | 9.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.503 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.120 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.097 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.124 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.262 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.195 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.785 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.502 |
| SRR2868004 | Drought Stress (root) | 17.634 |
| SRR2967015 | Control (root) | 16.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.880 |
| SRR9715740 | Leaf | 6.889 |
| SRR9715741 | Leaf | 6.118 |
| SRR9715739 | Root | 11.598 |
| SRR9715742 | Root | 14.801 |
| SRR9715743 | Root | 14.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.962 |
| SRR8749028 | MeJA induced 9h | 14.005 |
| SRR8749029 | MeJA induced 9h | 17.276 |
| SRR8749030 | Uninduced | 4.229 |
| SRR8749031 | Uninduced | 1.063 |
| SRR8749032 | Uninduced | 1.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.142 |
| SRR8400027 | Control - Root | 26.724 |