Gene detail

Gene detail information of Glyur000203s00012871.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42250.1	4.00E-107	Zinc-binding alcohol dehydrogenase family protein
NR	XP_004501981.1	3.15E-162	PREDICTED: alcohol dehydrogenase-like 7-like [Cicer arietinum]
COG	YP_008046593.1	1.00E-64	alcohol dehydrogenase GroES-like protein [Spiribacter salinus M19-40]
Swissprot	tr\|Q9FH04\|ADHL7_ARATH	1.00E-128	Alcohol dehydrogenase-like 7
trEMBL	tr\|I1NE11\|I1NE11_SOYBN	1.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G10240.2}

Sequence

Transcript Sequence

>Glyur000203s00012871.1
GGCGGTTGCTAGAAGACCCGGTGAGCCATTGGTCNTTGNGGAGATCATTGTGGCCCCACCAATGCCTCGTGAGGTTCGGATTCGTATTATATGCACCTCTCTCTGCCACAGTGATATCACTTTTTGGAAGATGCAGGAACCTCCTGGCTTTTTCCCAAGAATTCTGGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTGGGGAAGGATGTAACTGAAGTCACAAAAGGAGATGTGGTTATTCCAATTTTCCTACCAGATTGTGGGGAATGTATAGATTGCAAATCAACCAAGAGCAACCGTTGTACCAATTTCCCTTTCAAGTACACTGTGGTTGACATTGCCAATGTTACAAAGATTGACCCAGAAATCCCTCCAGACAGGGCATGTCTTCTCAGTTGTGGGGTAGGTGCTGCTTGGAGAACAGCAGGTGTGGAGCAAGGGTCTACAGTAGCTATTTTTGGGCTGGGATCTGTTGGATTAGCAGTTGCAGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGATGTCAAACCAGAAAAATTTGAAATTGGAAAAAAGTTTGGACTCACAGACTTTGTCCATGCTGGAGAATGTGGGAACAAACCTGTGAGCCAGGTTATCATAGAGATAACTGATGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTACATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCAGGAGCCAGGTTGAGCCTCAGTTCTAGTGAGGTCCTTCATGATGGGAAGACCCTCATGGGATCCTTATTTGGAGGACTCAAACCCAAGGTTGTGGAAAGTGTAGGGAAGGATGTAACTGAAGTTACAAAAGGAGATGTGGTTATTCCAATTTTCCTACCAGATTGTGGGGAATGTATAGATTGCAAATCAACCAAGAGCAACCTTTGTACTAATTTCCCTTTCAAGGCAACTCCATGGATGCCTAGACATGGTACTACTAGATTCACCGACCTAAATGGAGAAATCATATCCCATTTCATGTTTGTTTCAAGTTTCAGCGANTACACTGTGGTTGACATCGCCAACGTAACAAAGATTGACCCAGAAATTCCTCCTGACAGGGCATGCCTTCTCAGTTGTGGTATAGCAGCAGGGATAGGTGCTGCTTGGAGAACAGCAGGTGTGGAGCCAGGGTCTTCNGTTGCTATTTTTGGCCTGGGATCTATTGGATTAGCAGTTGCAGAGGGAGCCAGGCTTTGTGGAGCAACTAGGATTATAGGTGTAGATGTCAACCCAGAAAAATTTGAAGTTGGAAANAAGTTTGGGGTCACAGACTTTGTCCATGCTGGAGAATGTGAGAACAAACCTGTGAGCCAGGTTATCGTAGAGATAACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGCATGACATCTTCGGGTTGGGGAAAAACAATTGTTTTAGGACATGACAACAAACCTGGAGCCAGGCTGAGCCTCAGTTCTAGTGAGGTCCTTCATGATGGGAAGACNCTCAAGGGAACCTTATTTGGAGGACTCAAACCTAAGTCTCATGTATCCATTCTCCTCAAACATCTAGTTTGTCTCAAGACAAAACCTGAAAGCTTAGGGGAGCATGTGCTGCTTGCTTTTGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00203	6536	14799	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00121	frmA, ADH5, adhC	EC:1.1.1.284 1.1.1.1	Carbon metabolism	map01200
			Degradation of aromatic compounds	map01220
			Glycolysis / Gluconeogenesis	map00010
			Methane metabolism	map00680
			Fatty acid degradation	map00071
			Tyrosine metabolism	map00350
			Retinol metabolism	map00830
			Chloroalkane and chloroalkene degradation	map00625
			Naphthalene degradation	map00626
			Metabolism of xenobiotics by cytochrome P450	map00980
			Drug metabolism - cytochrome P450	map00982
			Chemical carcinogenesis	map05204

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000203s00012871.1	PF08240.7	ADH_N	2	84	3.90E-22
Glyur000203s00012871.1	PF00107.21	ADH_zinc_N	138	261	3.40E-19
Glyur000203s00012871.1	PF08240.7	ADH_N	263	351	4.00E-08
Glyur000203s00012871.1	PF00107.21	ADH_zinc_N	395	506	9.40E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.387
SRR1783600	control	1.362
SRR1783602	moderate drought stress	1.967
SRR1811619	moderate drought stress	2.111

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.577
DRR006520	Root Summer glycyrrhizin high producing strain	3.407
DRR006521	Root Winter glycyrrhizin high producing strain	6.808
DRR006522	Root Winter glycyrrhizin high producing strain	6.533
DRR006523	Root Summer glycyrrhizin low producing strain	6.063
DRR006524	Root Summer glycyrrhizin low producing strain	6.006
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.442
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.503

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.152
SRR2868004	Drought Stress (root)	5.438
SRR2967015	Control (root)	5.250

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.377
SRR9715740	Leaf	13.132
SRR9715741	Leaf	9.904
SRR9715739	Root	4.488
SRR9715742	Root	4.783
SRR9715743	Root	4.506

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.312
SRR8749028	MeJA induced 9h	5.126
SRR8749029	MeJA induced 9h	4.938
SRR8749030	Uninduced	2.252
SRR8749031	Uninduced	0.726
SRR8749032	Uninduced	0.973

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.335
SRR8400027	Control - Root	7.579