Gene detail

Gene detail information of Glyur000202s00015419

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02780.1	1.00E-77	Ribosomal protein L19e family protein
NR	AFK39636.1	1.84E-136	unknown [Lotus japonicus]
COG	YP_183936.1	6.00E-35	50S ribosomal protein L19e [Thermococcus kodakarensis KOD1]
Swissprot	tr\|Q9LUQ6\|RL192_ARATH	8.00E-120	60S ribosomal protein L19-2
trEMBL	tr\|I3SJE5\|I3SJE5_LOTJA	7.00E-137	Ribosomal protein L19 {ECO:0000256\|RuleBase:RU000574}

Sequence

Transcript Sequence

>Glyur000202s00015419.1
AGGTTGGTCTTTGTGCTTTCGCTATAGCATTGGAAGGGAGCAATAGCAGGGCAGAGAGGGTGAGAGAGAGAGAGAGAGAGAGGAGGGGAAAGATGGTATCGTTGAAGCTACAGAAGCGGCTGGCCGCTAGCGTGCTCAAGTGCGGCAGAGGCAAGGTTTGGCTTGACCCTAATGAGTGCAATGAAATCTCCATGGCCAATTCTCGACAAAACATAAGAAAGTTGGTTAAGGATGGGTTTATCATCAGGAAACCAACTAAGATTCACTCGCGCTCTCGCGCTCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGCCACTCCGGATATGGTAAGCGTAAGGGTACNAGGGAGGCAAGGCTTCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTCAGNCGCTTGCTTCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCACATGTACCACGACATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTCCTAATGGAGAGCATACACAAGTCCAAAGCNGAGAAGGCAAGAGAGAAGACCTTGTCTGATCAGTTTGAGGCCAAGCGTGCNAAGAACAAGGCTAGCAGGGAGAGAAAACTTGCTCGGAGGGAGGAGCGTTTGGCCCAAGGTCCAGGAGAAAAGCCATCAGCAGCTCCCACTGCTACACCTGCAACAGCGTCCCAGCCAGCCCACGGTGGGAGATATATAGTGTCTCCTTCCACCGTTCGCCTATCAAAGGAGAGAGAGAGAGAGAGAGGGAGAGTGAGAGTGAGAGGGAAGATGGTGTCGCTTAAGCTTCAAAAGCGGCTTGCCGCTAGCGTGCTCAAGTGTGGCAGGGGCAAGGTTTGGCTTGACCCTAATGAGTGCAATGAGATTTCCATGGCCAATTCTCGCCAAAACATAAGGAAGTTGGTTAAGGATGGCTTCATTATCAGGAAGCCAACAAAGATTCACTCCCGCTCTCGTGCTCGGCGCATGAAGGAGGCCAAGAGGAAGGGACGCCATTCTGGATATGGTAAGCGTAAGGGTACAAGAGAGGCAAGGCTACCCACCAAGATCCTTTGGATGAGGAGGATGCGTGTCCTCAGACGTTTGCTTCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCACATGTACCATGATATGTACATGAAGGTAAAGGGTAATGTTTTCAAGAACAAGAGAGTCCTAATGGAGAGCATACACAAGTCAAAGGCTGAGAAGGCCAGAGAGAAGACTTTATCTGATCAGTTTGAGGCCAAGAGGGCAAAGAATAAGGCAAGCAGGGAGAGGAAACTTGCTAGGAGAGAGGAGCGCTTGGCCCAGGGTCCTGGAGAGAAGCCAGCACCAAGTGCACCAACAGCAGCAGCAACGCTGCCAGCCCAAGCACCACCCAAGAAGTCCAAGAAATGGAGATGCACCTCTTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00202	239784	245568	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000202s00015419.1	PF01280.15	Ribosomal_L19e	3	149	3.00E-62
Glyur000202s00015419.1	PF01280.15	Ribosomal_L19e	237	383	1.30E-63
Glyur000202s00015419.2	PF01280.15	Ribosomal_L19e	3	149	4.90E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	86.183
SRR1783600	control	71.956
SRR1783602	moderate drought stress	79.573
SRR1811619	moderate drought stress	76.408

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	247.756
DRR006520	Root Summer glycyrrhizin high producing strain	244.388
DRR006521	Root Winter glycyrrhizin high producing strain	197.149
DRR006522	Root Winter glycyrrhizin high producing strain	187.424
DRR006523	Root Summer glycyrrhizin low producing strain	232.761
DRR006524	Root Summer glycyrrhizin low producing strain	231.320
DRR006525	Leaf Summer glycyrrhizin high producing strain	117.744
DRR006526	Leaf Summer glycyrrhizin high producing strain	115.197

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	273.974
SRR2868004	Drought Stress (root)	190.109
SRR2967015	Control (root)	176.903

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	124.017
SRR9715740	Leaf	116.406
SRR9715741	Leaf	113.419
SRR9715739	Root	74.553
SRR9715742	Root	150.825
SRR9715743	Root	120.929

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	390.750
SRR8749028	MeJA induced 9h	272.771
SRR8749029	MeJA induced 9h	462.776
SRR8749030	Uninduced	82.732
SRR8749031	Uninduced	95.615
SRR8749032	Uninduced	104.749

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	236.690
SRR8400027	Control - Root	207.184