Gene detail

Gene detail information of Glyur000202s00015411.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02330.1	0	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_003591482.1	0	Pectinesterase [Medicago truncatula]
COG	YP_001821146.1	5.00E-52	pectinesterase [Opitutus terrae PB90-1]
Swissprot	tr\|Q8RXK7\|PME41_ARATH	0	Pectinesterase 41 (Precursor)
trEMBL	tr\|G7IEK2\|G7IEK2_MEDTR	0	Pectinesterase/pectinesterase inhibitor {ECO:0000313\|EMBL:AES61733.1}

Sequence

Transcript Sequence

>Glyur000202s00015411.1
ATGGCTTTCAAGCACTTCTCCGTTTCCTATAAGCTAGTTTCTTTCTTGGTCTTGGCATCATTAATGTCCATAGCACATGGTGGTTCATCCNNNATCGTTCCACCAGAGACCATTTGTGGGTCCACGGTAGACCCTACTTATTGCAAAAATGTGTTTGCTAATTATCAAAATGGCAACATCTATGACTATGGCCGCATTTGTATTGGAAANTCCATGTCCCAGTCCCGTAAGTTCTTGAACTTAGTGGACTCATATCTTCAAGGAAGCTCGTCTTTGTCTCAATCCACAATTCGTGCTCTCGAAGATTGTCGATTCCTTGCTGAGCTAAGTTTTGATTACTTATCAAACACCTATGCCACGACCAATCAATCAAGTGAAGTTCTTCCAACTTCACAAGCTGAAGATTTTGAAACCATCCTCAGTGCCGTTTTGACCAACCAACAAACATGTTTGGATGGCCTAGAGACTGCAAATTCTGATCCAAGAGTGAAGAACGAGCTGTCCTCGTCCCTCTCGGATGACACAAAGCTTCACAGTGTCTCCCTTGCCTTGTTCCTCGAGGGTTGGGTGCCAACGAAGAAAACAAAAACATCATGGCAACAAAACGGGAAACATTTGAACTTCAAAAATGGTCGTTTACCATTGAAGATGTCAAATAAAGCACGTGCTGTTTATGATTCCGCTAGACGCAATGGGAGAAAACTACTTCAAACGGTCACTAACGACGAAAGTGTTGTGGTAAGAGACATCGTGGTGGTTAGTAAGGATGGAAGTGGAAACTTCACCACTATCAATGATGCAATTGCTGCTGCACCAAATAACACCGCCGCTAGCGATGGCTACTTCTTGGTCTTTATCAACGAAGGCGTGTATGAAGAGTATGTATCCATAGACAAGAAGAAGAAGTACTTGATGCTTGTTGGAGAAGGTATCAATCGGACAGTTATCACAGGCGATCACAATGTTGTTGATGGCTTTACAACTTTCAACTCGGCTACATTTGCTGTGGTTGGTCAAGGGTTCGTGGCAGTTAACATAACAATCCGCAACACTGCTGGACCAAGCAAGCATCAAGCAGTTGCACTGAGGAGNGGAGCGGATATGTCCACCTTTTACAGCTGTAGCTTTGAAGGGTATCAAGACACACTGTATGTGCACTCCCTGAGGCAGTTTTACAGAGAATGTGATATCTATGGAACAGTTGACTTCATATTTGGAAATGCNGCGGTTGTTTTGCAAAACTGTAACATNTACCCTCGCCTCCCTCAAAGTGGACAATTCAATGCCATCACTGCTCAAGGNCGAACTGACCCAAATCAAAACACCGGCATTTCCATACAGAACGCGACAATCAAAGCTGCAGATGATTTGGCCCCCANTGTTGGAACTGTGAAAACATATCTGGGAAGACCATGGAAGGAATATTCNAGGACAGTTTTTATGCAATCGTTCATGGATAGTTTGATAGATCCTGCTGGTTGGCGTGAATGGAGTGGTGATTTTGCGTTGAGCACATTGTACTATGCAGAGTATGATAACAGGGGACCCGGTTCAAGCACTTCAAATCGAGTCACATGGCCTGGTTATCATGTTATCAACGCTAATGACGCAGCCAATTTTACGGTGTCTAATTTCTTGATCGGGGATGATTGGATTTCTCAAACTGGTGTCCCCTTCTTGAGTGGGCTCATATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00202	170818	172986	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000202s00015411.1	PF04043.10	PMEI	36	184	3.20E-21
Glyur000202s00015411.1	PF01095.14	Pectinesterase	251	548	5.50E-139

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.027
SRR1811619	moderate drought stress	0.022

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.444
SRR2868004	Drought Stress (root)	21.974
SRR2967015	Control (root)	12.294

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.078
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.361
SRR8749028	MeJA induced 9h	0.341
SRR8749029	MeJA induced 9h	0.108
SRR8749030	Uninduced	0.031
SRR8749031	Uninduced	0.216
SRR8749032	Uninduced	0.523

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.974
SRR8400027	Control - Root	1.083