Gene detail information of Glyur000202s00015405 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02816.1 | 6.00E-45 | Protein of unknown function, DUF538 |
| NR | CDX89942.1 | 3.94E-88 | BnaA10g01400D [Brassica napus] |
| Swissprot | tr|Q9M015|Y5161_ARATH | 1.00E-11 | Uncharacterized protein At5g01610 |
| trEMBL | tr|A0A078DM08|A0A078DM08_BRANA | 1.00E-88 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00202 | 124534 | 128878 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000202s00015405.1 | PF04398.7 | DUF538 | 28 | 136 | 2.30E-37 |
| Glyur000202s00015405.1 | PF04398.7 | DUF538 | 186 | 294 | 4.10E-37 |
| Glyur000202s00015405.1 | PF04398.7 | DUF538 | 340 | 448 | 8.40E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 53.632 |
| SRR1783600 | control | 54.566 |
| SRR1783602 | moderate drought stress | 24.336 |
| SRR1811619 | moderate drought stress | 24.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.320 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 51.224 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.340 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.991 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.516 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.079 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 155.343 |
| SRR2868004 | Drought Stress (root) | 93.623 |
| SRR2967015 | Control (root) | 86.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.459 |
| SRR9715740 | Leaf | 48.971 |
| SRR9715741 | Leaf | 37.227 |
| SRR9715739 | Root | 80.007 |
| SRR9715742 | Root | 56.098 |
| SRR9715743 | Root | 55.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.711 |
| SRR8749028 | MeJA induced 9h | 19.044 |
| SRR8749029 | MeJA induced 9h | 21.283 |
| SRR8749030 | Uninduced | 22.466 |
| SRR8749031 | Uninduced | 10.440 |
| SRR8749032 | Uninduced | 13.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 95.923 |
| SRR8400027 | Control - Root | 94.719 |