Gene detail

Gene detail information of Glyur000202s00015404

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02380.1	4.00E-17	senescence-associated gene 21
NR	NP_001237596.1	1.29E-43	uncharacterized protein LOC100527032 [Glycine max]
Swissprot	tr\|P32292\|ARG2_VIGRR	4.00E-39	Indole-3-acetic acid-induced protein ARG2
trEMBL	tr\|C6T331\|C6T331_SOYBN	5.00E-44	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G02070.1}

Sequence

Transcript Sequence

>Glyur000202s00015404.1
AAACACAAAACGGCTCTAGGAATCAACCAATAGGTGTTAAGAAGAAAAGGAGAGGTGGTAGTCAAGTAGTAGATGCTCCCTAATTTTGACGGGGCTCGTATCTTCGCTTAACGAGGCAACGAATTTTCTGTTTCCTTACGCGTCCCCTCTCCTTTCCTTCGCCTATATAAACCCCAACAGTTTTCCCTCTCCCTGCAATCAACTCATCACAACACGATAGCTAGCTTCCCTTGTGGAAACCTCAGACACCACACACAAGTTCCTCTACTCCTCGCTGTGGACAGCTTATACACAGGATCATTTACTTCTAAGAAATAAGCTTTCCGCAGCTAACCATCATCAATTTGAACACAATTCTTTTTAATTTTAATTTTAATCATCAATGGCTCGCTCCTTCACTAACGTCAAGGTTATCTCTGCTCTAGTTGCCGACGGAATCTCCAACTCTCTTACCAGGCGAGGATATGCTGTGGCTGCAACACAAAGCGCGTCAAGGGGAGTAACTTCCTCGTCCATGGTAAGCCCCCCAAAGTCAGGAGAAGATCACAAGGTGGCTGAAAAGGTAGCGTGGGTCCCAGATCCCGTCACCGGTTACTACAAACCGGAGAACACCAAAGAGATTGACGTTGCCGAGTTGCGAGCAACCGTTTTGGGCAAAAAGTTTAACCACTAAATTTCAACTGGTTCTTGTGCTCNCTTGAACGCAACGGTGTGGCTTTGTTGGGTAACGGTTTTGAGGTTCACAAAACCTTCCGGGATTTAATCGACTATATATCTTTTGATGNTGTACTTCTCTTGCTCTGTTCTTGGAAATGAAGCAATCGTGTTCTCTTTTCGTCCAGTTTTTTTGTACCCCCATATGTAAGCTTTAATTTTATAAATGAATTGAAAATTGAAATGAAGATAAGCGCATTTGTTGTATAATTTTCATGATTTCGATAATAATTTGAAGAAGAAAGATAGGTAGACACCTCTTGGGGTTTATATCATTGGAAAGAAATAGAATGAGATGAGAAAAAAATGATAAAATAATATGATATGTGATGTAATAATTAGAAAAAAATAAAAAATATTAAATGAGTAAATATATTTTTAAAATATATGAATATCATTTCTCTAATTTGAATTTGGGTTGTGGTCGTGAACCGTTTTCTGATCCGTGACACTCACGTTCGAATAATATGGTACCCCCAGCCCCAGGACCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00202	114637	116053	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006950 response to stress

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000202s00015404.1	PF03242.8	LEA_3	1	90	2.00E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.246
SRR1783600	control	30.054
SRR1783602	moderate drought stress	6.554
SRR1811619	moderate drought stress	6.417

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.103
DRR006520	Root Summer glycyrrhizin high producing strain	36.315
DRR006521	Root Winter glycyrrhizin high producing strain	9.025
DRR006522	Root Winter glycyrrhizin high producing strain	8.636
DRR006523	Root Summer glycyrrhizin low producing strain	41.850
DRR006524	Root Summer glycyrrhizin low producing strain	41.829
DRR006525	Leaf Summer glycyrrhizin high producing strain	107.974
DRR006526	Leaf Summer glycyrrhizin high producing strain	107.822

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.945
SRR2868004	Drought Stress (root)	41.427
SRR2967015	Control (root)	61.275

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	648.182
SRR9715740	Leaf	781.201
SRR9715741	Leaf	695.883
SRR9715739	Root	44.359
SRR9715742	Root	48.054
SRR9715743	Root	40.536

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	110.061
SRR8749028	MeJA induced 9h	57.075
SRR8749029	MeJA induced 9h	94.575
SRR8749030	Uninduced	112.823
SRR8749031	Uninduced	20.324
SRR8749032	Uninduced	28.364

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.551
SRR8400027	Control - Root	28.405