Gene detail

Gene detail information of Glyur000202s00015401

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G53760.1	GAMMA-TUBULIN COMPLEX PROTEIN 4
NR	XP_004495944.1	PREDICTED: gamma-tubulin complex component 4 homolog [Cicer arietinum]
Swissprot	tr\|Q9SC88\|GCP4_MEDTR	Gamma-tubulin complex component 4 homolog
trEMBL	tr\|I1JBK8\|I1JBK8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G02100.1}

Sequence

Transcript Sequence

>Glyur000202s00015401.1
CTTCTCGGACCAGTGCACGACGCCGTTCCAAGTCCAACTTTGGCTTTGGAGTGGACTCTCTTGNGACTTAACCAAAATTCAAATCCTTCTGACCTAACATTTCTTCACCAGCAATCCCCATTCTTCACACACATGCATCTTTGCCACAAAACGATATAATAATAGGTTAGCTTCTCAAGAGACAACAATAATGTTGCACGAGCTTCTCCTAGCGTTACTGGGCTACACCGGCGACTTAATCATCGACCGGAGGGATAACCTCTCCGGCGAGACCCCCATCTCCGACGAATGCACTTTTNAGCTCGCCCCTGACATCTCTTTTATCGACCCAAGCGATAGGGAACTTATTGAGAGGATCATCACGTTGGGATTTTATTATAGGGAGCTGGAGCGGTTTTCAGCCAAGTCTAGGAATCTAAACTGGATAAGGTCTCCAAATGCGAACCCTTTGGAGAAAAGGGAGAAGCCCAGTGTTTATCGTAGGGCCCTTGCCAATGGCATTGTTGAGATACTCTCAGTTTATAGGTCATCGATTCTGCACATTGAGCAGTTGTTGTTGTCTGAAACCATGCCCATCTTGGCAACGGTTACTCAAGGCCTAAACAAGTTCTTTTCCCTCTTGCCACCTTTGTATGAGCTCATCCTAGAGATTGAGCGTGAGGATATTCGTGGTGGTCAACTTCTCAATCTTCTGCATAAAAGATGCCACTGTGGAGTGCCCGAATTACAAACTTGCATACAAAGGCTTCTCTGGCATGGGCATCAGGTCATGTATAACCAGCTAGCATCATGGATGGTTTATGGGATTCTTCAGGACCAGCATGGAGAGCTTTTCATTAGAAGGCAAGAGGATAGAGATGTAGAGAATAGCTCATCTCGTCCAGAAATCTCTGAAAAATTGTCACGCTTGTCAACTGATGATGCGTCTTTAACTGATTGGCACATGGGCTTTCATATTTCTTTGGATATGCTGCCAGAATATATACCTATGCGCGTTGCAGAATCAATTCTTTTTGCTGGCAAAGCTGTCAGGATTTTGCGGAATCCAAGTCCTTCCTTCCTGTCTGGGGATGATGTGTATCCTCAAATGCCTAAAAGCTTTCAGAAAATACATGGATTTGCAGGGCATTTTCATTTACGAAGGGAGCCTGTAATTAATACCGGAATGGGAGGAGAAGATTTGCTTCCACAATCTGAGGCAGATAAGACAGAAGCTATGCTTCAGGACCTAAAGGAATCATCTGAATTTCATAAAAGATCATTTGAATGTGCTGTGGACTCTATTCAGGCTATTGCAGCCAGTCATCTCTGGCAGCTTGTGGTTGTACGTGCTGACTTGAATGGCCACCTGAAGGCTTTAAAAGACTATTTTCTTTTGGCAAAAGGAGATTTCTTCCAGTGTTTCCTTGAGGAAAGTCGTCAGTTAATGCGATTGCCACCTCGCCAGTCAACTGCTGAAGCTGATCTTATGGTCCCATTTCAGCTGGCTGCATTAAAAACTATTAGTGAAGAAGACAAATATTTCTCTAAAGTGTCCTTGCGGATGCCGTCTTTTGGAATCACAGTTAAATCTTCCCAATTAGATTTACCAAAGACAACCTCTGCTGCTGTAGATGGTAGCTCCGGTGCTTCACTTTCAAATGCTTCTTCAGAAATGTCAGTTGATGGTTGGGATGGTATTGCTCTTGAGTATTCTGTTGATTGGCCTTTGCATTTGTTCTTTACTCAAGAAGTCNTCTCTAAGTACCTTAAAGTATTCCAATACTTACTGCGGCTCAAACGAACACAAATGGAGTTGGAGAAGTTATGGGCATCTGTAATGCATCAATATCATCGTGACTTTTCCAAAAATCTAAATGATCAAGACAAGAGTTCAATGACACAGCAGAGGCGTCAGCGCTTTCGACCAATGTGGCGTGTTAGAGAACATATGGCATTCTTGATCAGAAATCTCCAATTTTATATTCAGGTGGATGTGATAGAGTCTCAGTGGAATATTTTACAATCCCGTATTCAAGATTCTCATGACTTCACAGAACTTGTGGGCTTTCATCAAGAGTATCTGTCAGCCTTGATTTCGCAAACTTTCTTGGACATTGGTTCTGTTTCAAGGATACTGGATAGCATCATGAAGCTTTGCCTGCAATTTTGCTGGAATATTGAGAACCAAGATGACTATTCAAATACTTCCGAATTGGAACATATAGCTGAGGAATTCAACAAGAAATCAAATTCCTTGTACACTATACTGCGCAGCAGCCGGCTTGCTGGAAGTCAGCGGGCTCCATTTTTGAGACGTTTTCTCCTGCGGTTAAATCTGAATTCCTTCTTTGAGGCAACTGCGCGGGGGGTGTTGAATGTTGTCAGGCCACGTCCTACACTTCCTGTTTTAAATCAACAGTACCTTAAAGTATTCCAATACTTACTGCGGCTCAAACGAACACAAATGGAGTTGGAGAAGTTATGGGCATCTGTAATGCATCAATATCATCGTGACTTTTCCAAAAATCTAAATGATCAAGACAAGAGTTCAATGACACAGCAGAGGCGTCAGCGCTTTCGACCAATGTGGCGTGTTAGAGAACATATGGCATTCTTGATCAGAAATCTCCAATTTTATATTCAGGTGGATGTGATAGAGTCTCAGTGGAATATTTTACAATCCCGTATTCAAGATTCTCATGACTTCACAGAACTTGTGGGCTTTCATCAAGAGTATCTGTCAGCCTTGATTTCGCAAACTTTCTTGGACATTGGTTCTGTTTCAAGGATACTGGATAGCATCATGAAGCTTTGCCTGCAATTTTGCTGGAATATTGAGAACCAAGATGACTATTCAAATACTTCCGAATTGGAACATATAGCTGAGGAATTCAACAAGAAATCAAATTCCTTGTACACTATACTGCGCAGCAGCCGGCTTGCTGGAAGTCAGCGGGCTCCATTTTTGAGACGTTTTCTCCTGCGGTTAAATCTGAATTCCTTCTTTGAGGCAACTGCGCGGGGGGTGTTGAATGTTGTCAGGCCACGTCCTACACTTCCTGTTTTAAATCAACAGTAGTGTATATATCATTCCACCACAAGTTCAAAGTTTCTCACTTCCCGGGGTATTGCTTGGCATGTGTTCAGTGACCTTCGGTTGAGTAAATTTCCCTCCCCATCATCTCGTCCGGAGGATGAGTTTTCAAGCTGACAATCAAGTTGCCATCTATTCGCTGCTGATGTTTGAACGTCCTGCAACNGTCCTTTGAATGTCAGTTACACATTCCATATGCTGTTTTGAGAAGGTGGTTGTTGGTCTTAGCTGATTCTGATTGATTTTATTGTAAACACTGGACGGTTTTGAAGGTGTCATGCTTGTGCTTCTTAGGTGGCTGTTGTTGTCTTTCCCACTTTGTTGTCATTTATAGATATATGAGCAGTGAGTGATCGGTGTGTATAGTGTAATNGGTTTTCAATATTTTGATTTACGATACTTAAAGCAGTTCTTCAGGCTTGGATCCGTTGTTTATCCTCTCCCACCCTACTCNCATTTTATTATGAGTATGCACAATGGCTTGGCACTGAAGAAATAAATCCAAATGATTTGAAATTTAGGCCCTTGAAGCAGCTGAAAATTATGCTCTCCAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00202	85449	94418	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000226 microtubule cytoskeleton organization

cellular_component

GO:0000922 spindle pole

GO:0005815 microtubule organizing center

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000202s00015401.1	PF04130.8	Spc97_Spc98	4	633	2.70E-131
Glyur000202s00015401.1	PF04130.8	Spc97_Spc98	736	852	4.00E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.095
SRR1783600	control	10.137
SRR1783602	moderate drought stress	12.064
SRR1811619	moderate drought stress	11.891

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.771
DRR006520	Root Summer glycyrrhizin high producing strain	9.748
DRR006521	Root Winter glycyrrhizin high producing strain	10.184
DRR006522	Root Winter glycyrrhizin high producing strain	9.962
DRR006523	Root Summer glycyrrhizin low producing strain	10.350
DRR006524	Root Summer glycyrrhizin low producing strain	10.163
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.618
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.516

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.196
SRR2868004	Drought Stress (root)	19.776
SRR2967015	Control (root)	20.110

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.593
SRR9715740	Leaf	11.270
SRR9715741	Leaf	11.403
SRR9715739	Root	7.473
SRR9715742	Root	10.984
SRR9715743	Root	9.708

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.867
SRR8749028	MeJA induced 9h	5.259
SRR8749029	MeJA induced 9h	3.942
SRR8749030	Uninduced	2.108
SRR8749031	Uninduced	0.694
SRR8749032	Uninduced	1.456

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.284
SRR8400027	Control - Root	15.621