Gene detail information of Glyur000202s00015400 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47590.1 | 3.00E-151 | photolyase/blue-light receptor 2 |
| NR | XP_004495945.1 | 0 | PREDICTED: blue-light photoreceptor PHR2-like [Cicer arietinum] |
| COG | YP_007133471.1 | 2.00E-76 | cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437] |
| Swissprot | tr|Q8LB72|PHR2_ARATH | 0 | Blue-light photoreceptor PHR2 |
| trEMBL | tr|V7BFJ8|V7BFJ8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW16325.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00202 | 81451 | 84445 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000202s00015400.1 | PF00875.13 | DNA_photolyase | 120 | 278 | 2.30E-42 |
| Glyur000202s00015400.1 | PF03441.9 | FAD_binding_7 | 333 | 445 | 8.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 93.587 |
| SRR1783600 | control | 93.645 |
| SRR1783602 | moderate drought stress | 71.393 |
| SRR1811619 | moderate drought stress | 70.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.729 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 59.027 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.410 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.006 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.939 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 47.903 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 213.235 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 209.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 96.010 |
| SRR2868004 | Drought Stress (root) | 99.370 |
| SRR2967015 | Control (root) | 84.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 222.397 |
| SRR9715740 | Leaf | 291.122 |
| SRR9715741 | Leaf | 216.400 |
| SRR9715739 | Root | 103.194 |
| SRR9715742 | Root | 87.197 |
| SRR9715743 | Root | 88.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.735 |
| SRR8749028 | MeJA induced 9h | 34.946 |
| SRR8749029 | MeJA induced 9h | 20.244 |
| SRR8749030 | Uninduced | 32.889 |
| SRR8749031 | Uninduced | 18.478 |
| SRR8749032 | Uninduced | 17.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 93.660 |
| SRR8400027 | Control - Root | 102.243 |