Gene detail

Gene detail information of Glyur000202s00015397

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G62890.1	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004495951.1	PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Cicer arietinum]
Swissprot	tr\|Q683I9\|PP295_ARATH	Pentatricopeptide repeat-containing protein At3g62890
trEMBL	tr\|I1L7U9\|I1L7U9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G02260.1}

Sequence

Transcript Sequence

>Glyur000202s00015397.1
ATGTACTCTTCCTGTGGTAGCGTCCCCTTTGCCCACCAAGTGTTCGACGAAATTCCTCACCCAGACTTGCCATCCTGGAACGCCATCATCCACGCAAATGCCAACCTGGGTCTGATCCACAATGCCAGGAAACTGTTCGATCGAATGCCTCAGAGGAACGTCATNTCGTGGAGCTGCATGATTCATGGTTACGTGAGCTGCGGAGAGTACAAGGCGGCACTTTCCCTCTTTCGTGATCTGCAGAATCACAATCTCAGACCCAATGAGTTCACCATGTCAGCTGTGCTCTCCGCTTGTGCACGGTTAGGTGCGCTTCAGCATGGAAAATGGGTTCATGCTTATATTGACAAATCCGGGATGAAAGTCGATGTTGTCTTAGGGACTTCTCTGATAGACATGTATGCCAAATGTGGAAGCATTGAAAGGGCCAAATGCATATTTGATCACATGGGTCCTGAAAATAAGGATATCATGGCTTGGAGTGCCATGATCACTGCCCTTGCCATGCATGGACTCTCGGGAGAATGCCTTGAACTTTTTGCAAAGATGGTGAATGATGGTGGCAGGGTGAGGCCCAATGCCGTGACTTTTGTGGGTGTTCTTTGTGCTTGTGTGCATGGAGGTTTGGTTAGCGAAGGGAATCATTATTTCAAGAGGATGAAGGAAGAGTATGGTGTTAGTCCTCTGATCCAACATTATGGTTGCATGGTTGATTTGTACAGCAGAGCGGGTTTGATTGAGGATGCTTGGGGTGTGGTGAAATCAATGCCTATGGAACCTGATGTGATGATATGGGGAGCTCTGCTTAGTGGGGCTAGGATGCATGGGGACATTGAGACTTGTGAGATCTCAGTAAAGAAACTCATTGAGTTGGACCCCAAGAATAGTGGTGCCTATGTTCTTCTTTCCAACGTGTACGCAAAGCTGGGACGGTGGGGGGAAGTGAGGCATCTCAGAGATCTTATGGAGGTCAGGGGCATTAAGAAAGTTCCGGGGTGTAGTTTGGTTGAGATAGATGGTGTTCTTCATGAGTTCTTTGTGGGAGATGATTCTCATCCAGAAACCCAAAACATACATAGGATGCTTGAAGAGATTATGAAGAGGTTGGAAAAGAAGGGTTATGTACGGAACACGAGTGAGGTATTGCTTGATTTGGATGAGGAAGGAAAGGAGTTTGCATTGTCTCTTCATAGTGAGAAACTGGCAGTTGCATATTGCTTCCTCAGGACAAGCCCGGGTACCACAATACGGATTGTGAAGAACTTGAGGATATGTGGCGATTGTCATGTTGTAATGAAGATGATATCTAGGGAATTTAAGAGGGAGATTGTTGTTAGAGACTGCAACCGTTTTCACCATTTTAGAAATGGGCTGTGCTCCTGTAAAGACTACTGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00202	69340	70737	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000202s00015397.1	PF13041.1	PPR_2	53	101	2.10E-11
Glyur000202s00015397.1	PF01535.15	PPR	128	150	0.021
Glyur000202s00015397.1	PF01535.15	PPR	159	187	0.00011
Glyur000202s00015397.1	PF01535.15	PPR	233	257	0.0095
Glyur000202s00015397.1	PF01535.15	PPR	299	327	0.54
Glyur000202s00015397.1	PF14432.1	DYW_deaminase	338	455	1.90E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.529
SRR1783600	control	10.465
SRR1783602	moderate drought stress	9.923
SRR1811619	moderate drought stress	9.882

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.099
DRR006520	Root Summer glycyrrhizin high producing strain	5.909
DRR006521	Root Winter glycyrrhizin high producing strain	4.245
DRR006522	Root Winter glycyrrhizin high producing strain	4.277
DRR006523	Root Summer glycyrrhizin low producing strain	7.017
DRR006524	Root Summer glycyrrhizin low producing strain	7.090
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.927
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.737

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.270
SRR2868004	Drought Stress (root)	1.430
SRR2967015	Control (root)	1.833

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.118
SRR9715740	Leaf	5.180
SRR9715741	Leaf	1.738
SRR9715739	Root	9.968
SRR9715742	Root	4.655
SRR9715743	Root	4.240

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.203
SRR8749028	MeJA induced 9h	1.460
SRR8749029	MeJA induced 9h	2.110
SRR8749030	Uninduced	0.364
SRR8749031	Uninduced	0.461
SRR8749032	Uninduced	1.099

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.900
SRR8400027	Control - Root	2.121