Gene detail

Gene detail information of Glyur000202s00015395

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05560.3	2.00E-46	Ribosomal L22e protein family
NR	XP_004495952.1	8.96E-67	PREDICTED: 60S ribosomal protein L22-2-like [Cicer arietinum]
Swissprot	tr\|Q9M9W1\|RL222_ARATH	7.00E-61	60S ribosomal protein L22-2
trEMBL	tr\|I1JBL1\|I1JBL1_SOYBN	2.00E-66	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G02140.1}

Sequence

Transcript Sequence

>Glyur000202s00015395.1
CACAGCTCAAAAATTATCTTATCCACACAGCTGAGTTACCGCAATGAGTCCCAGTCTTGCAAACTGAGTTTGCCTGTACTTGGCAACCCAAATGAAAACCATCAGCATACAGTAAACCCTAGCATCAATTTTGAATTCGATAGGCTACGAAAAAAGATGCTTTACCACAAAAGAAGCTCGGGCAGTGCCTGTAAGACCTGCATACAGAAATCACTGGTTACGAGTTAGAAATTCAAAATCATAATAGAAATTATAGTTGGATATGTATACATTACGAGTCTCGATGCATAANAGAGATTTACCTTGTTGACGAGCGTCGTAGGGACTAGAACAAAAGCCCCAGACTGCACCGGCCTGAAGAGAAATTCACAGTTTCATATACGCTGTCTGATTTGGCAAATGAGGAAGCAAACTGGGATAAACGATGTTACCGTTCCGAGGCGAATGAGAGCCTCAACGGCGAGGGAGGAGCATGGAACGTCGTCGTTCAGGTCTTCTTCCATTTTCTCTCTCTGTCGCAGCAGCGCAAGGCACTAGCGGTACGGGCATTTTACATAACTGGGCCTGTCTAGTTGGGCTCGGCCCAGATTAAAATATTTTATGGCCCAAAAGCTTTAAATAGGCCTTGGGAGGTTTTTGCAAGATTGAAACCCTAGTTTCGGGAGGAGGCAGTAGCAGGAGGAGAGTGATTGAGGCGCGAAGCGAAAATGAGCGGTGCGAAGGGGAAGAAGAAGGGGACGAGCTTCGTGATCGATTGCGCGAAGCCGGTGGAGGATAAGATTATGGACATTGCTTCCCTCGAGAAGTTCCTTCAGGAGAGGATTAAGGTTGGCNGCAAGGCTGGTGCACTCGGTGATTCCGTTACCGTTACCCGGGACAAGACCAAGATCACCGTCACCTTCGACAGCAACTTCTCCAAAAGGTATCTGAAATACTTAACCAAGAAGTACTTGAAAAAGCACAATGTGAGAGATTGGCTTCGGGTCATTGCCTCCAACAAGGACCGGAATGTCTATGAGTTGAGATACTTCAACATCGCTGAGAATGAGGGTGAGGAGGAAGACTGAAGATCTAATTCTCTGTCTTGAGGCACACTCCATTAGGTGTAATTGTTGTGGAGTCTCTTTTATCTATGTTTTTTATCGACTTGTTACTGATTGTTTTCAATATTTCTGTGTTTAATTTGGAACCAGTTGATGCCTTCTGCGAGTTTTATAGTGATTGTTGGAGAGTTTATCATATAAATTCAGATGCAGTTTTGCGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00202	65818	68005	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000202s00015395.1	PF01776.12	Ribosomal_L22e	7	118	4.40E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	74.130
SRR1783600	control	74.575
SRR1783602	moderate drought stress	56.913
SRR1811619	moderate drought stress	57.752

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	139.616
DRR006520	Root Summer glycyrrhizin high producing strain	138.402
DRR006521	Root Winter glycyrrhizin high producing strain	90.281
DRR006522	Root Winter glycyrrhizin high producing strain	87.559
DRR006523	Root Summer glycyrrhizin low producing strain	83.968
DRR006524	Root Summer glycyrrhizin low producing strain	83.029
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.485
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.299

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	264.468
SRR2868004	Drought Stress (root)	155.134
SRR2967015	Control (root)	148.020

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	99.837
SRR9715740	Leaf	100.692
SRR9715741	Leaf	83.810
SRR9715739	Root	136.367
SRR9715742	Root	105.493
SRR9715743	Root	116.163

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	118.441
SRR8749028	MeJA induced 9h	38.720
SRR8749029	MeJA induced 9h	79.048
SRR8749030	Uninduced	15.579
SRR8749031	Uninduced	7.654
SRR8749032	Uninduced	17.004

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	207.360
SRR8400027	Control - Root	194.310