Gene detail information of Glyur000202s00015394 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62880.2 | 1.00E-31 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein |
| NR | XP_006444360.1 | 1.71E-53 | hypothetical protein CICLE_v10022836mg [Citrus clementina] |
| Swissprot | tr|Q9LZH8|OP164_ARATH | 6.00E-40 | Outer envelope pore protein 16-4, chloroplastic |
| trEMBL | tr|A0A067HGQ4|A0A067HGQ4_CITSI | 6.00E-54 | Uncharacterized protein {ECO:0000313|EMBL:KDO87202.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00202 | 64259 | 66339 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000202s00015394.1 | PF02466.14 | Tim17 | 11 | 127 | 3.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.527 |
| SRR1783600 | control | 11.397 |
| SRR1783602 | moderate drought stress | 13.307 |
| SRR1811619 | moderate drought stress | 12.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.021 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.252 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.290 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.245 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.901 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 36.079 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.429 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.026 |
| SRR2868004 | Drought Stress (root) | 25.844 |
| SRR2967015 | Control (root) | 32.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.095 |
| SRR9715740 | Leaf | 20.328 |
| SRR9715741 | Leaf | 18.231 |
| SRR9715739 | Root | 10.316 |
| SRR9715742 | Root | 13.302 |
| SRR9715743 | Root | 12.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.547 |
| SRR8749028 | MeJA induced 9h | 20.801 |
| SRR8749029 | MeJA induced 9h | 34.243 |
| SRR8749030 | Uninduced | 11.961 |
| SRR8749031 | Uninduced | 10.129 |
| SRR8749032 | Uninduced | 19.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.799 |
| SRR8400027 | Control - Root | 33.558 |