Gene detail

Gene detail information of Glyur000202s00015389.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62830.2	0	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004495956.1	0	PREDICTED: UDP-glucuronic acid decarboxylase 2-like [Cicer arietinum]
COG	YP_007108422.1	3.00E-159	NAD-dependent epimerase/dehydratase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q9LZI2\|UXS2_ARATH	0	UDP-glucuronic acid decarboxylase 2
trEMBL	tr\|G7IF53\|G7IF53_MEDTR	0	UDP-glucuronic acid decarboxylase-like protein {ECO:0000313\|EMBL:AES61772.1}

Sequence

Transcript Sequence

>Glyur000202s00015389.1
ATGAGTTCAGAATTGATTTTCAGAGGGCACGAGACCCAGACGGTGGACGACGCGTACTCGCCGAAGCCAAACAAGCCATGGCTCTCCGTGATTCGCCCGATTCGTTACATGCTCCGCGAGCAGCGACTCGTCTTCGTCCTCGTCGGCGTCGTCATAGCCACTCTCTTCTTCACCCTCGCACCCTCTTCTTCTTCCTCCACTTCCTACTCACGCGTTCCGTACGAGCCTCACCCGATCTCATACTTCGAGCGGGAGTCGTCGGTATACCACCAGCAGCGCGGTGCCGTTGCGGCGGTGCATTCGATGGGGAAGGTGCCGCTGGGGATTAAGAGGAAGGGGCTCCGGATCGTGGTTACCGGCGGGGCGGGTTTCGTCGGGTCTCACCTGGTGGATCGGTTGATGGCGAGAGGCGACAGCGTGATCGTGGTCGACAATTTCTTCACTGGGAGAAAAGAGAACGTGATGCACCATTTCGGAAACCCCAGATTTGAGCTCATCCGACACGACGTCGTCGAACCCCTCTTACTCGAAGTCGATCAGATCTACCACCTCGCCTGCCCCGCTTCCCCTGTTCATTACAAGTTCAACCCTACCAATGTGGTGGGGACACTCAACATGCTCGGTCTCGCTAAGAGAGTGGGCGCAAGGTTTTTGCTAACCAGTACCAGTGAGGTTTATGGTGATCCTCTGCAGCACCCCCAGAAGGAGACCTACTGGGGCAACGTCAACCCAATTGGTGTCCGAAGCTGCTACGACGAGGGAAAGCGTACGGCAGAGACATTGACTATGGACTACCACAGAGGGGCCGGTGTGGAGGTTAGAATTGCTAGGATTTTTAACACCTATGGGCCCCGAATGTGCTTAGATGATGGCCGTGTGGTCAGTAACTTCGTTGCTCAGGCACTAAGGAAGGAGCCCTTGACTGTTTATGGGGATGGGAAACAGACAAGGAGTTTCCAGTATGTCTCTGATTTGGTGGAGGGTCTAATGCGCCTTATGGAAGGAGAACATGTAGGACCTTTCAACCTTGGAAATCCGGGCGAATTTACCATGCTTGAACTTGCCAAGGTGGTCCAAGAAACAATCGACCCAGATGCCAAGATAGAGTACAGGCCCAATACCGAGGATGACCCACACAAGAGAAAGCCTGATATAGGTAGGGCTAAGGAGCTCCTTGGCTGGGAACCCAAGGTGGACCTGCGCAAGGGCCTCCCACTAATGGTTTCTGACTTCCGGCAACGCATTTTTGGTGACCATAAGGAAGGTGCAANCGAAGCCTAATTCGTGCTGAGAGAGCATGTTATGTGTACCTTAGGGCTTAGAGTGAGAAAGGGAAACGATATAGTCTGAGGATAACAGTTAGTAGGGCATTTCCCATTCCCCCAAAGGTCCATTAGTCACAGCAGGATATGAGCTCTATTAAAATGTCCCTTTTGTCGTTTGTTCTCCGTTAATATCTTTAAATGCGGGTTATTACCCTCTTCCGAGATTGGTAGCCAGCCATGATTTCATTTATCAAATTCCTGCCATCTATATTCTATTTCTATATATTTTTTTGAATGTAATTGGTATGTACAAGAGACTACAGCTATAGTTATTTCAACATTTTACCTTTCACTTGTTGCATTTGACTTGANTTTCACAAGTCACAACCTCCTGTCTGCAATATGATCCTTAGATTTTGTAGAGCTTGCATTCTGTACTTGTCCTGGGCCTCTTATCTCAAGGCACAACTGCACAAGTGATTCTGAATTTACTTGCATCAGGGCCCAATATATCAAATTCATTATAAATATAATAATGTAGGATTTCTTGTCTGTGGTTTTCTTCGCGTATTGAAGGATTTGGTGATTGTGCCTCTCTAAGGTTTACTACTNCTATGATAGTTTTAGTGAAGCATTTGATTTTGAAGCCTTAAATATTTTGATCTAGTTTTGGAAACATATATGGACCACTCATATTATGTACCAGGGGAAGAAGCAATGAATTTGGCCACGGTAAAACACATTATTCAATTACTTTTTAGCTACAAGACAACGACAAACGCCCACTGGTGTGGGTTTCAAAATTCTACAGTGATGCCCGGCGTTCTTGCAAGTCATCAACATTGCCATGTTTTAAAGTTTGACTCGGTAGATAAGACTCAACCTGTGCCTTGCTCGTAGCACGCTTGTCCAGCCAAGCTATGATGTCTGCAAAGACAATTTCGATGTTTTCATCGGGTTCCCCATTGGTTAAGCCATGCCACATTCCTGGGTACAATTTCATGGTCTTGTCTACACTACTGGCTCGCTCATATAATGCCTTGCTTACTTCTGGGTCTGTCACTGTATCTAGCTCTCCATGCAACAATAAGAACGGCAGTGTCACCTGCTCCAAATTAAACTCCCAGAATGAGACCCCCAAAAAGGGGTAATTTGATTACAAATTAGAATAAAAAACCAAGTTTTGCAGATCACCTCATGTAAGCTGTTTTCAAGACTCGAGCTGGCTCTCAGCAGTTCCAATGATGTTTTCAACCTGGGCTTGTCCTGGTATATCAACTTGTTTGCCCTTATCTGCAACCATCATCATCAAAGGACACATAATTAACTCTGGCAGAACAAAAACTAAGATTTTTAAGTCATTTACTCATTGAGCCTCACCGTTTCCCGTTTGGCAGGATCTTTGAAGCCTGAATCGATGACATCCTTTGTGGGAACTATCTTCCACTTTGGAATAAAAGTTTCCAATCCAGTCAATATGCTCACAGCAACAGGATGTGGCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00202	52153	57402	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08678	UXS1, uxs	EC:4.1.1.35	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000202s00015389.1	PF01370.16	Epimerase	116	344	8.70E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	95.702
SRR1783600	control	95.759
SRR1783602	moderate drought stress	74.489
SRR1811619	moderate drought stress	73.580

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	91.937
DRR006520	Root Summer glycyrrhizin high producing strain	91.256
DRR006521	Root Winter glycyrrhizin high producing strain	49.749
DRR006522	Root Winter glycyrrhizin high producing strain	48.388
DRR006523	Root Summer glycyrrhizin low producing strain	61.586
DRR006524	Root Summer glycyrrhizin low producing strain	62.342
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.836
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.770

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	134.761
SRR2868004	Drought Stress (root)	80.102
SRR2967015	Control (root)	80.057

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.023
SRR9715740	Leaf	12.921
SRR9715741	Leaf	16.516
SRR9715739	Root	93.182
SRR9715742	Root	92.000
SRR9715743	Root	82.404

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	136.848
SRR8749028	MeJA induced 9h	86.701
SRR8749029	MeJA induced 9h	84.842
SRR8749030	Uninduced	78.553
SRR8749031	Uninduced	35.333
SRR8749032	Uninduced	33.166

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	118.315
SRR8400027	Control - Root	118.670