Gene detail

Gene detail information of Glyur000201s00012389

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73805.1	1.00E-92	Calmodulin binding protein-like
NR	XP_003630882.1	0	hypothetical protein MTR_8g104510 [Medicago truncatula]
trEMBL	tr\|G7L9S5\|G7L9S5_MEDTR	0	Calmodulin-binding-like protein {ECO:0000313\|EMBL:AET05358.1}

Sequence

Transcript Sequence

>Glyur000201s00012389.1
GAATTTAACCCAAATATTTTACATACATAGCTTTGCCATATAAAAATCCAAACCCTCTCATCCTTCCTCTCATATATCTTGCTAGCTCAGATCGTGCAACCTTAATTTCCAATCCCAGCTGGTCCCAAATTAGTCACCAAAATGGCCGCGAAACGGTATTTCGATGATTCTGATCAAGACAAAGACAAGCCAAGCGACAAACGAATGAGAACCGCAAGACCCTCTTTTGCTTCGGTCATAGGAGAAGTGGTTATGGTGAAAAACCTGCAGAACCTTTTCTCAGGCATGGAACCTTTGCTCAGAAGAGTGGTGAATGAAGAGGTGGAGCGAGCAGTGAGACATTGTGGTCAACGGTCAATAACAAAGTCCCCTTCTTTGAGAGTANTCCAAGCATTGGAGCAACCATCAAGCTTTCAACTCATGTTCACCAAAAAGCTTTCCCTCCCNATATTCACGGGTAGCAAGATACAAGACATGGATGGGAACCAAATCCACGTGGCTCTTGTTGACGATAATCAAGTGGTCCCCACAAGTCTCCCACACCCCATCAAGCTAGAAATCGTGGTTCTTGATGGTGATTTCCCTCATGGTGAGAAGAAGGAGTCATCATCATCATCATCATCATGGACGAGTGAGGAATTCAATAGGTACATAGTGAGGGAGAGAACGGGGAAGAGGCCTTTGCTTACGGGAGAGTACTTGAATCTCACCATGAGGGATGGGGTTGCACCCATTGGGGACATTGAGTTCACTGACAATTCTAGCTGGATTCGTAGTAGGAAGTTCAGAGTCGCTGTTAGAGTTGCTCCTGGGAGTAATCCAAGTATCCGAATTCGTGAAGGCTTCACCGAACCATTCATCGTGAAAGATCACCGTGGTGAATTGTACAAGAAACACCACCCACCAATGCTCCACGACGAAGTGTGGCGCCTNGAGAAGATTGGGAAAGACGGAGCTTTCCACAAAAAATTGTCCTTAGAGGGGATTGCCACAGTGCAAGAATTTCTTAAGTTATCTGTTGTTGATCCTCTTAGACTCAGAAAGATATTAGGCATTGGGATGTCAGAGAAAATGTGGGATGTGACAATTAAGCATGCAAAGACTTGCAACATGGGCAACAAGCTCTACGTCTACCGTGGTACTCATTTTACCATCTTTCTGAATGCCATATGCCAGTTGGTACGAGCTGATATCNACGGCCAAACACTTCCCAACCGAGAGTTGAGCAACATGAACAGGAGCTATATAGAGAAATTGGTGAGAGAAGCATATGCTAGATGGAATGAGTTAGAGGAAATTGATGGGGTTAATTTGAATGATAACGTTGCTTTGTTAACCCAAGACATTGTTTTGTCCTGGATAGTTTTTGGGGGTTTTCGAGCTTCTTTGTCACCGGATGTAGCGAAAAGGGTTGGAAAGAAATGTTACCGCGTGCAAGATTTGAATGAAAAGTTGAGGTTTTTGCAGAAAGAATTGGCAAGTATTATCAATGGGAAAGTTTCAAATTGTAGCTTTACTGATAGCTTATGTGAAATCAACCAGATGCTTGTTCCTTTGTTGACGTGGACACATCGAACATCAAAGAAGGATGCAAGCCACAGGATTTCTCCTCCTCCTTTACAAGCTGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00201	242748	248933	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000201s00012389.1	PF07887.6	Calmodulin_bind	91	391	1.30E-116
Glyur000201s00012389.3	PF07887.6	Calmodulin_bind	91	366	9.60E-109

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.400
SRR1783600	control	0.395
SRR1783602	moderate drought stress	0.080
SRR1811619	moderate drought stress	0.096

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.250
DRR006520	Root Summer glycyrrhizin high producing strain	1.208
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	9.624
DRR006524	Root Summer glycyrrhizin low producing strain	9.870
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.977
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.007

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.420
SRR2868004	Drought Stress (root)	54.760
SRR2967015	Control (root)	33.730

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.371
SRR9715740	Leaf	60.748
SRR9715741	Leaf	66.530
SRR9715739	Root	1.391
SRR9715742	Root	17.515
SRR9715743	Root	14.430

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.439
SRR8749028	MeJA induced 9h	2.128
SRR8749029	MeJA induced 9h	1.959
SRR8749030	Uninduced	4.019
SRR8749031	Uninduced	7.142
SRR8749032	Uninduced	4.799

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.518
SRR8400027	Control - Root	16.100