Gene detail information of Glyur000201s00012383 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18295.1 | 5.00E-24 | Protein of unknown function (DUF1639) |
| NR | XP_002279484.2 | 5.47E-61 | PREDICTED: uncharacterized protein LOC100244117 [Vitis vinifera] |
| trEMBL | tr|F6HFN3|F6HFN3_VITVI | 2.00E-61 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB50899.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00201 | 192172 | 196096 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000201s00012383.1 | PF07797.9 | DUF1639 | 152 | 201 | 2.80E-25 |
| Glyur000201s00012383.2 | PF07797.9 | DUF1639 | 152 | 201 | 2.80E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.307 |
| SRR1783600 | control | 3.834 |
| SRR1783602 | moderate drought stress | 3.604 |
| SRR1811619 | moderate drought stress | 4.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.398 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.791 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.972 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.778 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.540 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.419 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.086 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.013 |
| SRR2868004 | Drought Stress (root) | 9.213 |
| SRR2967015 | Control (root) | 7.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.060 |
| SRR9715740 | Leaf | 10.581 |
| SRR9715741 | Leaf | 8.209 |
| SRR9715739 | Root | 1.340 |
| SRR9715742 | Root | 1.724 |
| SRR9715743 | Root | 1.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.344 |
| SRR8749028 | MeJA induced 9h | 3.887 |
| SRR8749029 | MeJA induced 9h | 2.064 |
| SRR8749030 | Uninduced | 5.134 |
| SRR8749031 | Uninduced | 6.654 |
| SRR8749032 | Uninduced | 4.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.786 |
| SRR8400027 | Control - Root | 5.125 |