Gene detail information of Glyur000201s00012367 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18370.1 | 0 | C2 domain-containing protein |
| NR | XP_003630866.1 | 0 | Plant synaptotagmin [Medicago truncatula] |
| Swissprot | tr|Q9FYT6|CRS1_MAIZE | 1.00E-68 | Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (Precursor) |
| trEMBL | tr|G7L9Q9|G7L9Q9_MEDTR | 0 | Plant synaptotagmin {ECO:0000313|EMBL:AET05342.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00201 | 132417 | 143218 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000201s00012367.1 | PF00168.25 | C2 | 286 | 332 | 21 |
| Glyur000201s00012367.1 | PF00168.25 | C2 | 439 | 478 | 5.80E-06 |
| Glyur000201s00012367.1 | PF00168.25 | C2 | 565 | 640 | 1.50E-16 |
| Glyur000201s00012367.1 | PF01985.16 | CRS1_YhbY | 942 | 1008 | 3.90E-11 |
| Glyur000201s00012367.1 | PF01985.16 | CRS1_YhbY | 1132 | 1203 | 9.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.624 |
| SRR1783600 | control | 3.610 |
| SRR1783602 | moderate drought stress | 4.729 |
| SRR1811619 | moderate drought stress | 4.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.078 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.118 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.662 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.662 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.307 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.267 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.662 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.788 |
| SRR2868004 | Drought Stress (root) | 17.847 |
| SRR2967015 | Control (root) | 16.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.471 |
| SRR9715740 | Leaf | 18.530 |
| SRR9715741 | Leaf | 11.509 |
| SRR9715739 | Root | 0.998 |
| SRR9715742 | Root | 5.255 |
| SRR9715743 | Root | 3.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.771 |
| SRR8749028 | MeJA induced 9h | 8.562 |
| SRR8749029 | MeJA induced 9h | 5.218 |
| SRR8749030 | Uninduced | 4.673 |
| SRR8749031 | Uninduced | 3.778 |
| SRR8749032 | Uninduced | 3.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.510 |
| SRR8400027 | Control - Root | 9.366 |