Gene detail

Gene detail information of Glyur000201s00012359.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25440.1	1.00E-66	B-box type zinc finger protein with CCT domain
NR	XP_003630849.1	4.25E-160	CONSTANS-like zinc finger protein [Medicago truncatula]
Swissprot	tr\|Q8RWD0\|COL16_ARATH	4.00E-78	Zinc finger protein CONSTANS-LIKE 16
trEMBL	tr\|G7L9P2\|G7L9P2_MEDTR	2.00E-160	Zinc finger constans-like protein {ECO:0000313\|EMBL:AET05325.1}

Sequence

Transcript Sequence

>Glyur000201s00012359.1
GGTCCCANAAAAATGTTCCTGTAGCAAAATTACCAAAAGTGCATGGGCAGAGAGCAACCCTGCAGTCCTAATTAGTCCCCACACAGGGGTGAGGGTCTCTCTCACACCACACTGTCAAGTCTCAACACACACACACACACACACCCAGAACAATAATTGAATTGAATCATCATTTGGATTCGGGTATCTAAATAAATGAAACACACACCCCCATTCCCCCAACCCATATAATTATTCCACTGTTACTCACCAGCATTAACCAAGAACAAGAGTTAGTTTCTTGTTTCTATGATCTCAGACATGAAAGGTGGTTCAGAAGGTGNAGCCTTGGGAGCAAAAACAGCAAGGGCGTGTGATAGTTGTTTACGAAGAAGGGCACGTTGGTTCTGTGGAGCAGATGATGCATTCCTCTGTCATGGGTGTGACACTTTGGTTCACTCTGCAAACCAGTTAGCAAGCAGGCACGAAAGGGTTCGGCTTCAAACCGCATCCTCAAAGGTAACAACAACATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTAGTCATCACAACAAACAACAGCGTCTCAAAGACCAAGTCTTTCTTTTGAACAGAACCAATAGTGTTCTTCCCCTTGTGCCAGAGCTTGGAGGTGATCAAGAACAGCTTCTTGATATTGATCATGAGGCTGATCAGCTATGCCGCGTGCCCGTGTTCGACCCTTTTGATCAAGAAGAAGAAGCACNTGATCATCAATTAGACAGTAGTAATTTCTGTGATCAGTTTGATGTGGATCTTGCTGAGTTTGCAGCTAATGTTGAGAGTTTACTCCATGATGAGGACTCACCATCATGCCAAGTGTTTGATTATGATTATAAAGAAGGAAATGAAATGGGTGCGCCATCGATGGTGGTTAAGGTTAAGGATGAATTAGAGATTGATGATCTGGAGTCAGTTCTTGACATGACAAACCAAGAGGACTTTCATAATTGGAACATTGACTCAGTGCTATCACAGGCACAAGAAGAGAAGGAGAATAAGGAGTCTTTGGTGGGTATTGGTGAGGGTGTCAATGACAGCATTAAAGAGGAAACTACAAAGAGAGACATATTTTTGAGACTAAACTATGAAGAGGTTATTAGTGCTTGGGCCAGCCAGGGTTCTCCTTCTCCATGGACTAATGGAAACCCTCCTAAGGATTATGACTATGACTGCTGGCAAAACTGCTTGGGTTCAAGTGGTGGTGTAGATGGGGGAGTGATGAGAAGCTTAAGGGGGTACCCAGATGATGGGGGAAGGGAAGCAAGGGTGTCAAGGTACAGAGAGAAAAGAAGGACTCGGTTGTTTGCAAAGAAGATAAGATACGAGGTGAGGAAGTTGAATGCAGAGAAGAGACCNAGAATGAAAGGTCGTTTTGTTAAGAGGAGTTCATGCTTTGTTAATGGGGCCACCACTACTGCTTTTCCAACTTACCATCACTGACATCGATCAATCAGTTAACGCGTGTGTCCATCTTTGCTTTTGTGCAAATTTGGATTAATTACTGCTTGGTTGGTTGGTTAATTTGGCTCTGTATAGCCTGATGTATTATAATAATTAGTATTAATTCCTTGACCAGGTTTTAATTTTACTAGAGTTTAGTTGTTGCTTGCTTGGGATGTTTCAATCTATCTCTAGCTCGCAGGTTAATTAGTAGTACTAATGGTAATCCTATATAGTCCCAGCTGGTTGAAGATCTTGGGTAATCAAATTTTGGAAGCCTTTTATTGTTGTTTCCTTAATTATTAGAAATTCAGTTGTTCAATGCTGATGCTATATATGGNTACCTTTCTAGGCTACTGATTGACAATGTTTAATATTAGGTTGAGATGACTGTTAATTGTTTATATTTTACTACAAGTTATATATATAGTACATCTACTCGTGATTTCGGTTCAGTGTCCTATTACACAGAACAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00201	86061	88126	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000201s00012359.1	PF00643.19	zf-B_box	19	62	5.20E-05
Glyur000201s00012359.1	PF06203.9	CCT	333	376	6.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.647
SRR1783600	control	0.700
SRR1783602	moderate drought stress	1.558
SRR1811619	moderate drought stress	1.709

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.897
DRR006520	Root Summer glycyrrhizin high producing strain	4.903
DRR006521	Root Winter glycyrrhizin high producing strain	2.090
DRR006522	Root Winter glycyrrhizin high producing strain	1.916
DRR006523	Root Summer glycyrrhizin low producing strain	7.027
DRR006524	Root Summer glycyrrhizin low producing strain	6.904
DRR006525	Leaf Summer glycyrrhizin high producing strain	67.120
DRR006526	Leaf Summer glycyrrhizin high producing strain	66.871

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.879
SRR2868004	Drought Stress (root)	8.804
SRR2967015	Control (root)	9.894

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.127
SRR9715740	Leaf	15.992
SRR9715741	Leaf	11.993
SRR9715739	Root	0.508
SRR9715742	Root	1.045
SRR9715743	Root	1.460

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.278
SRR8749028	MeJA induced 9h	0.413
SRR8749029	MeJA induced 9h	0.140
SRR8749030	Uninduced	0.163
SRR8749031	Uninduced	0.197
SRR8749032	Uninduced	0.175

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.325
SRR8400027	Control - Root	2.455