Gene detail information of Glyur000201s00012352 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47690.1 | 3.00E-38 | NADH-ubiquinone oxidoreductase-related |
| NR | XP_007163111.1 | 3.97E-51 | hypothetical protein PHAVU_001G207200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LZI6|NDS5B_ARATH | 7.00E-49 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B |
| trEMBL | tr|V7D0R7|V7D0R7_PHAVU | 1.00E-51 | Uncharacterized protein {ECO:0000313|EMBL:ESW35105.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00201 | 52176 | 55141 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000201s00012352.1 | PF10200.4 | Ndufs5 | 12 | 63 | 3.00E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.083 |
| SRR1783600 | control | 34.262 |
| SRR1783602 | moderate drought stress | 23.526 |
| SRR1811619 | moderate drought stress | 23.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.592 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 35.524 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.409 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.214 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.170 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.604 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 102.788 |
| SRR2868004 | Drought Stress (root) | 78.836 |
| SRR2967015 | Control (root) | 80.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 83.665 |
| SRR9715740 | Leaf | 60.012 |
| SRR9715741 | Leaf | 75.985 |
| SRR9715739 | Root | 21.137 |
| SRR9715742 | Root | 32.439 |
| SRR9715743 | Root | 23.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.512 |
| SRR8749028 | MeJA induced 9h | 8.242 |
| SRR8749029 | MeJA induced 9h | 14.158 |
| SRR8749030 | Uninduced | 8.948 |
| SRR8749031 | Uninduced | 4.644 |
| SRR8749032 | Uninduced | 8.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 69.475 |
| SRR8400027 | Control - Root | 76.158 |