Gene detail

Gene detail information of Glyur000200s00011181

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63860.1	5.00E-169	Regulator of chromosome condensation (RCC1) family protein
NR	XP_003525133.1	0	PREDICTED: ultraviolet-B receptor UVR8-like [Glycine max]
COG	YP_002462041.1	3.00E-53	chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|Q9FN03\|UVR8_ARATH	0	Ultraviolet-B receptor UVR8
trEMBL	tr\|I1K517\|I1K517_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G32790.1}

Sequence

Transcript Sequence

>Glyur000200s00011181.1
ATGGAAAATGAAGTGATGAGTGAAGTGAGTGCTTCACCGCGTCGTGTTGTTCTCATATCTGCCGGTGCCAGCCACACTGTGGCTCTTCTTACTGGAAATGTTGTTTGCTCATGGGGGCGAGAAGAGGACGGACAGTTAGGCCATGGTGATACGGATGATCGACTCCTACCCACAAAACTGAGTGTATTGGATGGCCAAGACATAGTATCTGTTACATGTGGAGCTGATTATACGGTGGCACGATCTGAGTCCAGCTTGGGTGTATACAGTTGGGGATGGGGTGACTTTGGAAGGTTGGGTCATGGTGATCATAGCGACTTGCTCATTCCTCATCCCATCAGAGCATTACAGTGCCTAAGGATAAAGCAAATTGCTTGTGGGGACAGTCATTGTTTGGCAGTTACCATGGATGGCAAGGTGCTGAGTTGGGGGCGCAATGTTAATGGTGAACTTGGACTTGGTACCACAGAGGACTCTCTTGTGCCCCAAAAAATTCAAACATTTGAGGGAGTACCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGTAGCAATTACTGAAGANGGGGATTTGTATGGATGGGGTTGGGGGCGATATGGAAACTTGGGATTGGGAGACAACAATGATCGCTTGATCCCTGAGAAAGTGGCAGTTAATGGTGACAAGATAGCCATGGTTGCTTGTGGCTGGAGGCATACGATATCCNTTTCATCTTCTGGTGGATTATACACAAATGGATGGGGAAAATATGGCCAGCTCGGACACGGAGATTTTGAGGACTATCTCATGCCTCGCAAGGTTCAAGCCCTGAGTGATAAGTTCATTTCTCAGGTATCAGGTGGGTGGAGGCATAGCATGGCACTCACGTCTATTGGACAACTTTTGGGCTGGGGTTGGAATAAGTTCGGACAGATTGGAGTTGGTAACAATTTTGATTGTTCCTCTCCCATGCAAGTGAACTTCCCCCTCGATGAGAAAGTAGTTCNGATCTCATGTGGGTGGAGACACACGATTGCTGTTACTGAACNTGAAAATGTATATTCTTGGGGAAGAGGTGCAAATGGACAACTTGGGCATGGAGACACCATAGACCGGAATGTTCCAGTGATTATTGAGGCTTTCAGTGTTGATGGATCTAGTGGGAAGCACAATCCTCAAATTATCCATCATCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00200	247185	252526	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000200s00011181.1	PF00415.13	RCC1	35	80	1.30E-13
Glyur000200s00011181.1	PF00415.13	RCC1	88	134	1.10E-14
Glyur000200s00011181.1	PF00415.13	RCC1	137	186	7.30E-17
Glyur000200s00011181.1	PF00415.13	RCC1	190	235	4.80E-13
Glyur000200s00011181.1	PF00415.13	RCC1	240	289	3.60E-13
Glyur000200s00011181.1	PF00415.13	RCC1	293	341	6.50E-14
Glyur000200s00011181.1	PF00415.13	RCC1	346	376	4.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.833
SRR1783600	control	0.938
SRR1783602	moderate drought stress	0.256
SRR1811619	moderate drought stress	0.246

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.309
DRR006520	Root Summer glycyrrhizin high producing strain	1.089
DRR006521	Root Winter glycyrrhizin high producing strain	0.348
DRR006522	Root Winter glycyrrhizin high producing strain	0.358
DRR006523	Root Summer glycyrrhizin low producing strain	6.346
DRR006524	Root Summer glycyrrhizin low producing strain	5.901
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.150
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.078

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.253
SRR2868004	Drought Stress (root)	3.078
SRR2967015	Control (root)	3.869

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.436
SRR9715740	Leaf	0.269
SRR9715741	Leaf	0.895
SRR9715739	Root	0.323
SRR9715742	Root	0.214
SRR9715743	Root	0.320

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.836
SRR8749028	MeJA induced 9h	1.859
SRR8749029	MeJA induced 9h	1.470
SRR8749030	Uninduced	0.047
SRR8749031	Uninduced	0.065
SRR8749032	Uninduced	0.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.130
SRR8400027	Control - Root	2.284