Gene detail

Gene detail information of Glyur000200s00011176

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33480.1	2.00E-68
NR	AFK46955.1	2.21E-126	unknown [Lotus japonicus]
trEMBL	tr\|I3T363\|I3T363_LOTJA	8.00E-127	Uncharacterized protein {ECO:0000313\|EMBL:AFK46955.1}

Sequence

Transcript Sequence

>Glyur000200s00011176.1
TAATAATAAAATCATAGAGGGGGAGAGTGGGAGTGAGAGAAAGAGAGAGGAGAGATTAGGGGAAATGGCACTACTGTTACGTTATTATTCTCCGGCAGCAGCAACAGTGACACCCAACTTCAAGTTTTACAATATCACGTTGAAGTCTCCTTCGTTCCCAACCTCNGCTTCATTCCCAATCCGTAATTTCACTTCCGCTTCTAGAATCTTCTGCCGTGCCGCCAAGTCGCAGACTGGCTCTGTCAACAACGAGAAGAAGCCTTCTTCTTCTTCCTCCTCTTCTAAGAANAAGAAGAAGAAGAAAAGCGCCGTTGGAGCTGATGATTCCGAACCTTTGAATCCCAACGACTTTGAACTTTTGCCTGATTTTTCGGTCGGTGCCGATGTCCAAAACGACGCCGNCAATTTCGGTTCCTCTTTCTATCACCCTCACGTGCCGTTGCCCCAACCTCCCACCGGATTCGTTTTGCACGATAACGGCAAGGTTACCCTCACTTCAACAAATCGACTTGCCACCGTAGTTGATCCCTCGAACAACCTTCCGTTAGAGTGTGTGATACGGAGAGTGTTCAAGAGTTCTGATAGAGACGAATGTATGCTGCTCTGCCCGGTTGACACACCCGTACAAATATTAAAGAGCTCATTTGATGGAGATGGATGGTCAGCTATCAGTGATGAGGAAGTTGAATCTATTCTCCCTGCCGCTGCTTATGCACTTGCCAAGATACACATGCATCTTGTTTATAGTGGGTACTGTTATACAGCACGTGGTGATGATGATGGTAAAGTAGTGGATGGGTTGCCAACTCAAGCCGTAGAAATTACATATTTTAATCTGGAAGGTGCTCGCTACATGATTTATACACCATCTGATCCACTTCTTTTTGTTGCTGTGAAGGTAAGCTTCCGCTTGTACAAGCTTCTTAGAGGGGAGAATGGGTTGTTTCAAATTGCTGATGATGAACTGCTCGAGGATCCTGCTGTCATTGATGCCATAGATGAGGAAACTGAATTTAATGCCTTGGTGGAAGAAGAAGCTGCTATTATTGAAGCAACGATGGATGAAAGTTAAACGGATATACTGTTTTTGCTGTAGAGCTGTTCCAGACAGTGGTTTAATTTTGTTTAGTATTTGTTCTCTGGAAACTGGAAAGCAATTAGGGATAGATGGAATGACCCCCTTTGTGTATATTATCAATTTTGTAAGGACTGCATCGATTTAGGGATCGTATGTGGAGACTGGAGAACCCCTTTGCCTCCTCAATTTTTTATTTTTTTAAAAAACTTAAATGTGGGGTAATCAATATAGGGAACGGGAACATTGCCTTCACAACGTCTTCTTGTTTTTCTTGTTCACTGTTTTATTATTCTCTTATTTGATTTCTACCACACCAAAAAAAAAAATTAGAAGGAAATTATAACCAATGTCATAAAATTTTCACTGACATAACAGAGAGCTATATGTCTAAGCTAACTATACCATACACATTCATCGCAATTCTCCAAAGGAAAAGAAAAAGTACTAAAACTAGTTAAAATAGCAAGCGATATTGGCAGAATTGAAGACCTTAATCTGATGACAACTTCGCTGGTACACGGGCTTTGTTGATGACCCCATATCGCTTGTCTTCGGCTACCTTAGCATGTATCTCTGCCCTTTCTTGGAAATACNTCTTGAAAGCCCTCGGAAGGAACCTTGGTATCAAGAACCCGAAAAGATTGATGGAGAAATAAACCAGATTAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00200	212269	217554	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000200s00011176.1	PF12527.3	DUF3727	222	302	1.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.217
SRR1783600	control	9.455
SRR1783602	moderate drought stress	11.537
SRR1811619	moderate drought stress	11.646

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.797
DRR006520	Root Summer glycyrrhizin high producing strain	14.620
DRR006521	Root Winter glycyrrhizin high producing strain	13.434
DRR006522	Root Winter glycyrrhizin high producing strain	13.324
DRR006523	Root Summer glycyrrhizin low producing strain	10.469
DRR006524	Root Summer glycyrrhizin low producing strain	10.601
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.459
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.708

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.620
SRR2868004	Drought Stress (root)	8.686
SRR2967015	Control (root)	8.944

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.898
SRR9715740	Leaf	34.562
SRR9715741	Leaf	30.813
SRR9715739	Root	4.626
SRR9715742	Root	9.979
SRR9715743	Root	8.567

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.087
SRR8749028	MeJA induced 9h	7.223
SRR8749029	MeJA induced 9h	8.537
SRR8749030	Uninduced	4.861
SRR8749031	Uninduced	2.373
SRR8749032	Uninduced	2.271

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.892
SRR8400027	Control - Root	12.639