Gene detail

Gene detail information of Glyur000200s00011174.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63800.1	0	Glycosyl hydrolase family 35 protein
NR	XP_006584659.1	0	PREDICTED: beta-galactosidase 6-like isoform X1 [Glycine max]
COG	YP_003380010.1	4.00E-37	beta-galactosidase [Kribbella flavida DSM 17836]
Swissprot	tr\|Q9FFN4\|BGAL6_ARATH	0	Beta-galactosidase 6 (Precursor)
trEMBL	tr\|I1KNX2\|I1KNX2_SOYBN	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000200s00011174.1
ATGGAGAAGTGGCTGGTTTTGGTGATGTTGCTGCTGGTGTCTTTGACATTACCAATGGAAGGTGAAGGCGTTGAAGCAGAGGTCACATATGATGGAAGATCTCTTATCATTGATAACCAGAGGAAAATCCTCTTCTCCGGTTCCATTCATTATCCTCGCAGCACTCCTCAGATGTGGCCAGCGTTGATAGCCAAAGCAAAAGAAGGAGGANTAGATGTGATTCAGACCTATGTGTTCTGGAATCTACATGAGCCCCAACCCGGTCAGTATGATTTCAGCGGCAGATATGACTTGGTGAGATTCATAAAGGAAATCCAAGATCAAGGCCTGTATGTTTGCCTTAGGATTGGACCTTATGTTGAGAGTGAATGGACATACGGGGGATTCCCATTTTGGTTACACGATGTCCCTGGCATTGTCTACCGAACCGATAATGAACCATTCAAGTTCTACATGCAAAATTTTACAACGAAAATAGTGAGCATGATGCAATCAGAAGGTTTATATGCTTCTCAAGGAGGTCCAATTATATTGTCACAGATTGAGAATGAATATCAAAACATCCAAAGATCATTTGGAGAAGAAGGATCACGGTATGTTGGGTGGGCTGCAGAAATGGCGGTGGGCCTCCGCACTGGAGTACCATGGGTTATGTGCAAGCAAACCGACGCTCCCGATCCAGTGATCAATACATGCAACGGAATGAGATGTGGAGAAACTTTTACAGGGCCAAACTCCCCAGATAAGCCTGCAATGTGGACAGAAAATTGGACTTCTTTGTACGTTTACACAAATTTCACATTCAATAATCAAANTCATATGAGTCATACTTGTTTCACACAAAATATTCATTACTACCAAGTGTACGGTGGCGAGCCATATATAAGGTCAGCCNAAGACATTGCATTCCATGTCACTCTTTTTATTGCAAGAAAAAATGGAAGCTATGTCAACTATTATATGTACCATGGTGGAACTAACTTCGGGAGAACGAGCTCTGCTTATTTTATAACATCCTATTATGATCAAGCTCCACTTGATGAATATGGTCTTTTAAGGCAACCCAAGTGGGGACATCTTAAGGAGTTGCATGCCACAATAAAGTCTTGTTCTACCACTTTATTGCAAGGAATGCAGAGGAATTTCTCTTTGGGTCAATTGCAGCAGGGTTACGTTTTTGAAGAAGAAAAAGAAGGNCGAGGAGGATGTGTTGCTTTCCTTATAAACAATGATAATGTGNATATGTGTACTGTCCAATTCCGCAACAGATCATACGAATTGCCACCAAAGTCAATNAGTATCTTACCAGACTGCCAAAATGTGACTTTCAATACTGCAACTGTAAATACAGAGATCAACAGAAGAATCATAAATCCAGTAAAAACATTCAGCTCAGTGGANGAATGGGAGCAATTTCAAGATGCCATCCCTAACTTTGAGGACACTTCGTTAATATCAAACTCATTACTTGAGCATATGAACATGACCAAAGACAAATCAGATTACCTTTGGTATACTGCTAGGTTTGAACATGATTTTCGTTGCAGTGAACCAATACTCCATGTTCAGTCTGCTNCTCATGTTGTCCATGCTTTTGCAGACGGCACATACATAGGAGGGGCGCATGGAAGTCATGATGTCAAGTCATTCACCTTACATGTCCCCATTACGCTAAATGATGGGACAAACAATATTTCTATACTAAGCGTTATGGTTGGACTCCCGGATTCAGGTGCATTTCTTGAAAGAAGATTTGCTGGCTTAACCACAGTGGAAATTCAGTGTGCCGAAGAGTCCTATGATTTTACCAACTCTACGTGGGGATATCAGGTTGGATTACTGGGAGAGCAATTACAAGCATATGAAGAACCAAAACCAAATAGCAGTTCTATTCAATGGTGTCAACTACTAGCTAGGAATACTACCAATCAGACGCTCACTTGGTACAAGAGTGTGTTTGATTCGCCGGAGGGAGATGAGCCTGTGGCCTTGAACCTTGAATCGATGGGAAAAGGCGAAGCCTGGGTGAACGGACAAAGCATTGGACGCTATTGGGTCTCGTTCCATGATTCTTCCAAAGACCAGCCTTCACAAACGCTGTACCACGTGCCTCGTTCGTTCCTTAAAGACACTGGAAACAACGTTTTGGTTCTGTTTGAGGAGATGGGTGGGAATCCTGTCCATNTCTCCCTCAACACTGTGTCAATTGCAGATTAGATTACGGCTTAGCTTTTCTAGATATTATCATCAAATATTCCCCACCGCGCGCTCCTTAATTAATATTACAAGGAAAAGAAAAACACACACACACACTGATCAAAAGCATGTACAGAAATTCCTTCTTTTTCCCATTTGNGTTATTTGTCTTGTATTATTCATCATAGTGAACCAACAAAATCTAATACTCTTTCAAAGCGATATTGGGATTGATTATTTGTAATCCATATACTCTGGCGTTTCTTATCATTTTCTCCAGCGTAAGGAAAAAGCCATTTACAATGAATAGCACATTTTTATCTTTCTCTAACAGAAAAGCACGAGAGTTTCTTTTATTATATTGCATTAATTCCCATTAAGGCTTGAATTTTAACATTTTCAACCTAAACCAGTCTTTCTGAACCGCCGCCTAAAAACATAACTGGCCAACACAGGAGAGAAAAAATTACCAAANCACGCAGACACGCGGAGAGCAATGACCATACCCACGTGTGGGAGGAAGCAAGTGTCGCACATGCTACACTACACGTTAGTTAGTATGCTATGAGTTGCAGGGCTTGCAGCGGTAGCAGAGGCGCTTGAAAGTTGAGAATATGATTATATGAACAATTCTGTCTCTCTCTCTCTCTCTCTCTCTTCAGTTCTGATCATCGCTCAAAATACGTCAATCAAGTACTGCCGATAATAACAACAACATACGAATTCTACATCTCCCTTTTAATTTACATATAACCTTGCTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00200	203765	211261	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000200s00011174.1	PF01301.14	Glyco_hydro_35	34	366	2.60E-101
Glyur000200s00011174.1	PF13364.1	BetaGal_dom4_5	477	571	3.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.465
SRR1783600	control	3.527
SRR1783602	moderate drought stress	4.905
SRR1811619	moderate drought stress	4.757

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.498
DRR006520	Root Summer glycyrrhizin high producing strain	22.838
DRR006521	Root Winter glycyrrhizin high producing strain	1.041
DRR006522	Root Winter glycyrrhizin high producing strain	0.853
DRR006523	Root Summer glycyrrhizin low producing strain	16.410
DRR006524	Root Summer glycyrrhizin low producing strain	15.908
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.916
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.797

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.000
SRR2868004	Drought Stress (root)	6.675
SRR2967015	Control (root)	7.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.835
SRR9715740	Leaf	2.171
SRR9715741	Leaf	6.905
SRR9715739	Root	0.398
SRR9715742	Root	4.348
SRR9715743	Root	3.857

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.195
SRR8749028	MeJA induced 9h	0.141
SRR8749029	MeJA induced 9h	0.312
SRR8749030	Uninduced	0.071
SRR8749031	Uninduced	0.143
SRR8749032	Uninduced	0.223

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.485
SRR8400027	Control - Root	14.391