Gene detail information of Glyur000200s00011172 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01720.1 | 4.00E-68 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
| NR | XP_004503901.1 | 1.74E-128 | PREDICTED: NAC domain-containing protein 2-like [Cicer arietinum] |
| Swissprot | tr|Q39013|NAC2_ARATH | 3.00E-82 | NAC domain-containing protein 2 |
| trEMBL | tr|G7LF13|G7LF13_MEDTR | 3.00E-125 | NAC-like transcription factor {ECO:0000313|EMBL:AET04823.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00200 | 194140 | 198344 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000200s00011172.1 | PF02365.10 | NAM | 7 | 54 | 3.10E-15 |
| Glyur000200s00011172.1 | PF02365.10 | NAM | 54 | 95 | 2.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.097 |
| SRR1783600 | control | 5.143 |
| SRR1783602 | moderate drought stress | 8.013 |
| SRR1811619 | moderate drought stress | 7.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 42.688 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.959 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 83.944 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 84.092 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 106.740 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 107.376 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 117.325 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 118.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.796 |
| SRR2868004 | Drought Stress (root) | 78.256 |
| SRR2967015 | Control (root) | 103.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 492.357 |
| SRR9715740 | Leaf | 340.739 |
| SRR9715741 | Leaf | 613.015 |
| SRR9715739 | Root | 44.567 |
| SRR9715742 | Root | 179.731 |
| SRR9715743 | Root | 153.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 392.517 |
| SRR8749028 | MeJA induced 9h | 618.345 |
| SRR8749029 | MeJA induced 9h | 532.999 |
| SRR8749030 | Uninduced | 182.926 |
| SRR8749031 | Uninduced | 457.633 |
| SRR8749032 | Uninduced | 456.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.372 |
| SRR8400027 | Control - Root | 42.443 |