Gene detail

Gene detail information of Glyur000200s00011169

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08750.2	3.00E-106	RING/FYVE/PHD zinc finger superfamily protein
NR	XP_004503898.1	0	PREDICTED: uncharacterized protein LOC101504710 [Cicer arietinum]
trEMBL	tr\|G7LF16\|G7LF16_MEDTR	0	RING/FYVE/PHD zinc finger protein {ECO:0000313\|EMBL:AET04826.1}

Sequence

Transcript Sequence

>Glyur000200s00011169.1
ATGGGCAAGGAAAATGTGCCGCCAATGACAAAAGATGTGAGTGATGATAGTTCCCCGAGTGTCGAGACTGTGGATTTAGAATCTCACTCTCGACTTAGTCTGGAGAAGGAGACAGGCTTGGCATGTTGTCGTGTGTGCCAGAGCGCTGAATCTGATAAAAGGGGAGATGCTGCACTAGAATTTTTGGGCATCACTCCAGTTATAGAAAGCAAGGGGGAAGTAAGGTCTGATGGCAAGGGAATTACAAAAAATATGTCTCTTAACAGAAATTTTGCTGGGATGGTGGAATTTGTAAGCCCTGATGGGGAGGTTTTCACTTGTAAAAATGATTTGGAATTTGGTTTGTCTCATGAAGATACATTAATTGAACTTGGTTGTTGTTGTAAAAATGACCTTGCTTTGGTACATTATGCCTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACTATTTGTGAAATATGCGGACATATAGCAAATAATATCAGAATATCTGACTTCAATAAGGTTGTTGGTTCCTTGAAGGAGTATGAAGCATTGAGGGAAAGAACTGCCAATGGGGATCCTGGTCCTGCACAAGTTCATTCAAATACTGGTGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGCAGCGACTAAGTGAAATTGCGCTGTGGTTTTGTCCTCATAATAGTAGTAACAATAACAACAATAGCAATGTGGACACAGTTTCACAGGTTGTTTCTGAGCAGCCTTTGAATATTGTTATCGAAGATGCTGTCCCTGAACAGAATCCTGCAACTAAGTGGGCTGTAGAAGGTACAGGGATCTTGCTTGCTACAGGGCTGCTTACCATCACCCTTGCATGGCTCATAGCTCCTCGTGTTGGAAAGATTTTGGTTAGAAGCATGATGTGCCTAATATTACCTATATTTGTTGTCCAGAAAACTGCAAGAAGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTGATTTTCTTCCGCTTCTTTGTGCTCACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACGCACGGTGCCCATACAACGTGATCCCTTAGTACAGAGCTTTAGCATCTTTGTTGAGTCCTACCTCCCTCTCAGCCTTCCACTCCCCGCCCATCTTTTCTTAACTATTTTATTTCCTTGCCATGTTAAATTTTGAGAGTATAGATATTCACTATAAAAGAGTCTGTTTGTTAGATTCTCATATTTGTTCAAAATAACAATTATACTGTTTGTTAGCTAGATTTCAGGCCGTACACACACTCATAAATGGGTGAACATGAGTATGCTCCGTAAGTACTTGGTCATGAAAAATATCCAAACTTAATAGTAAACCATTAGTTAAATAAATAATAATGCAGCATTTGCCAATGGGACAGCCATCATGNTATTGTGGCAGGGTTCTGTGGGTACAGACCAATTAGAGTGATAAATTTGATGGCATTCTAAAATGTCAATGTACAAATCCAATGGAAGGCAACTAAAATGTAGTTTGATATGTATTTATTTTGAACATTGATATATCGATGTACAATTTTAAATATAAATTGTACGGTGAAAATGACTGTAAATTATATTTTTTTCTTCATATAGGCACCTATCAAAAGTATTTGCACTTGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00200	178354	181800	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000200s00011169.1	PF12906.2	RINGv	121	155	2.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.867
SRR1783600	control	29.301
SRR1783602	moderate drought stress	16.910
SRR1811619	moderate drought stress	17.209

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.976
DRR006520	Root Summer glycyrrhizin high producing strain	27.159
DRR006521	Root Winter glycyrrhizin high producing strain	8.347
DRR006522	Root Winter glycyrrhizin high producing strain	8.104
DRR006523	Root Summer glycyrrhizin low producing strain	27.759
DRR006524	Root Summer glycyrrhizin low producing strain	27.375
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.441
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.431

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.263
SRR2868004	Drought Stress (root)	17.442
SRR2967015	Control (root)	15.004

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.540
SRR9715740	Leaf	7.508
SRR9715741	Leaf	7.782
SRR9715739	Root	12.605
SRR9715742	Root	14.089
SRR9715743	Root	12.760

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.618
SRR8749028	MeJA induced 9h	7.370
SRR8749029	MeJA induced 9h	10.414
SRR8749030	Uninduced	3.633
SRR8749031	Uninduced	0.990
SRR8749032	Uninduced	1.352

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.108
SRR8400027	Control - Root	27.026