Gene detail information of Glyur000200s00011167 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08740.1 | 0 | NAD(P)H dehydrogenase C1 |
| NR | XP_004503895.1 | 0 | PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like [Cicer arietinum] |
| COG | YP_007150767.1 | 3.00E-91 | NADH dehydrogenase, FAD-containing subunit [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q8GXR9|DHNA_ARATH | 0 | Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|I1K526|I1K526_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G32900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00200 | 164124 | 171548 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000200s00011167.1 | PF07992.9 | Pyr_redox_2 | 152 | 487 | 2.40E-19 |
| Glyur000200s00011167.2 | PF07992.9 | Pyr_redox_2 | 249 | 472 | 4.10E-08 |
| Glyur000200s00011167.3 | PF07992.9 | Pyr_redox_2 | 92 | 427 | 1.80E-19 |
| Glyur000200s00011167.4 | PF07992.9 | Pyr_redox_2 | 92 | 427 | 1.80E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.193 |
| SRR1783600 | control | 2.188 |
| SRR1783602 | moderate drought stress | 2.245 |
| SRR1811619 | moderate drought stress | 2.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.233 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.141 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.171 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.849 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.193 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.967 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.773 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.272 |
| SRR2868004 | Drought Stress (root) | 9.174 |
| SRR2967015 | Control (root) | 9.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.852 |
| SRR9715740 | Leaf | 25.180 |
| SRR9715741 | Leaf | 12.773 |
| SRR9715739 | Root | 1.608 |
| SRR9715742 | Root | 3.581 |
| SRR9715743 | Root | 3.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.945 |
| SRR8749028 | MeJA induced 9h | 2.214 |
| SRR8749029 | MeJA induced 9h | 2.473 |
| SRR8749030 | Uninduced | 1.191 |
| SRR8749031 | Uninduced | 0.658 |
| SRR8749032 | Uninduced | 0.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.598 |
| SRR8400027 | Control - Root | 8.855 |