Gene detail information of Glyur000200s00011161 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08720.1 | 0 | |
| NR | XP_003630366.1 | 0 | cyclase/dehydrase family protein [Medicago truncatula] |
| COG | YP_007147781.1 | 7.00E-30 | oligoketide cyclase/lipid transport protein [Cylindrospermum stagnale PCC 7417] |
| trEMBL | tr|G7LFP8|G7LFP8_MEDTR | 0 | Polyketide cyclase/dehydrase and lipid transporter {ECO:0000313|EMBL:AET04842.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00200 | 125328 | 130033 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000200s00011161.1 | PF03364.15 | Polyketide_cyc | 102 | 236 | 1.40E-21 |
| Glyur000200s00011161.1 | PF03364.15 | Polyketide_cyc | 352 | 483 | 2.00E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.278 |
| SRR1783600 | control | 0.278 |
| SRR1783602 | moderate drought stress | 0.413 |
| SRR1811619 | moderate drought stress | 0.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.628 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.700 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.207 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.207 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.160 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.199 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.603 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.540 |
| SRR2868004 | Drought Stress (root) | 7.511 |
| SRR2967015 | Control (root) | 3.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.598 |
| SRR9715740 | Leaf | 29.136 |
| SRR9715741 | Leaf | 27.766 |
| SRR9715739 | Root | 0.467 |
| SRR9715742 | Root | 1.690 |
| SRR9715743 | Root | 1.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.089 |
| SRR8749028 | MeJA induced 9h | 0.493 |
| SRR8749029 | MeJA induced 9h | 1.572 |
| SRR8749030 | Uninduced | 0.092 |
| SRR8749031 | Uninduced | 0.129 |
| SRR8749032 | Uninduced | 0.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.712 |
| SRR8400027 | Control - Root | 3.907 |