Gene detail information of Glyur000200s00011154 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46690.1 | 5.00E-10 | SAUR-like auxin-responsive protein family |
| NR | XP_003630381.1 | 4.23E-47 | Auxin-induced protein 6B [Medicago truncatula] |
| Swissprot | tr|P33083|AX6B_SOYBN | 2.00E-10 | Auxin-induced protein 6B |
| trEMBL | tr|G7LFR3|G7LFR3_MEDTR | 2.00E-47 | SAUR-like auxin-responsive family protein {ECO:0000313|EMBL:AET04857.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00200 | 82899 | 83216 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000200s00011154.1 | PF02519.9 | Auxin_inducible | 3 | 80 | 1.50E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.837 |
| SRR1783600 | control | 1.986 |
| SRR1783602 | moderate drought stress | 2.342 |
| SRR1811619 | moderate drought stress | 2.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.110 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.694 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.833 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.052 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.896 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.080 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.317 |
| SRR2868004 | Drought Stress (root) | 17.063 |
| SRR2967015 | Control (root) | 43.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.020 |
| SRR9715740 | Leaf | 27.117 |
| SRR9715741 | Leaf | 51.448 |
| SRR9715739 | Root | 29.855 |
| SRR9715742 | Root | 34.979 |
| SRR9715743 | Root | 28.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.205 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.140 |
| SRR8749030 | Uninduced | 0.429 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.145 |
| SRR8400027 | Control - Root | 6.342 |