Gene detail

Gene detail information of Glyur000200s00011152

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38290.1	6.00E-155	ammonium transporter 2
NR	XP_003630386.1	0	Ammonium transporter 3 member [Medicago truncatula]
COG	YP_006765569.1	4.00E-175	ammonium transporter [Leptospirillum ferriphilum ML-04]
Swissprot	tr\|Q84KJ6\|AMT31_ORYSJ	0	Ammonium transporter 3 member 1
trEMBL	tr\|G7LFR8\|G7LFR8_MEDTR	0	Ammonium transporter 1 protein {ECO:0000313\|EMBL:AET04862.1}

Sequence

Transcript Sequence

>Glyur000200s00011152.1
ATGGCAGCTCCTCCAGTGAACCCATTGCCGGTGGCATACGAGGCATGGACGAGCCTAGCAGTACCTGACTGGTTGAACAAAGGAGACAACGCATGGCAAATGGTGTCCGCCACCCTCGTTGGGATCCAGAGCATGCCAGGCCTCGTCATCCTCTACGGTAGCATCGTCAAGAAGAAATGGGCCGTCAACTCCGCCTTCATGGCCCTCTACGCTTTCGCTGCGGTCATCATTTGTTGGGCCACGTGGGCCTACAAGATGTCCTTCGGCGAAGAGCTCTTGCCCTTTTGGGGTAAAGCTGGGCCCGCGTTGGGCCAGAAGTTTCTCACCAAACGGGCCGCGCTACCCGCCACGTCGCATTACTACGACGATGGTCGGTTGGAGACCCCGGAGATTGAACCGTTTTATCCCATGGCCACTATGGTGTGGTTCCAGTGCGTGTTTGCTGCCATCTCGCTTGTGATCTTGGCTGGCTCTGTTTTGGCCAGGATGAATTTCAAGGCGTGGATGATGTTCGTGCCGCTCTGGCTCACTTTCTTTCTCTTACACCATTGGGGCTTTGTGGGGTGGGGTGGTGGGTTCTTGTTCCACTGGGGTGTTATGGACTACTCTGGTGGCTATGTCATCCATCTCTCTTCCGGAATTGCTGGCTTCACCGCTGCTTATTGGGTGGGACCAAGATCGAAGAAGGACAGAGAGAGATTCCCACCGAACAATGTGATACTAACGTTGGCAGGGGCGGGGCTACTATGGATGGGATGGGCAGGTTTCAACGGAGGAGATCCGTACGCGGCCAACACCGACTCGTCGATGGCGGTGCTCAACACCAACATATGCGCCGCCACCAGCCTCCTCGTGTGGANGTGGCTTGATGTCATTTTCTTCAAGAAGCCCTCTGTTATTGGAGCCGTTCAGGGCATGATCACTGGCCTTGTTTGCATCACTCCCGGCGCTGGTCTGGTTCAAGGATGGGCTGCGATAGTGATGGGAGTGTTTTCAGGCAGTGTTCCATGGTTCAGCATGATGATACTCGGGAAGAAGTTGACACTGTTNCAAAAGGTTGATGACACCCTCGCCGTGTTCCACACCCATGCCGTGGCTGGCCTTCTNGGTGGCATACTCACCGGCCTATTCGCGGAGCCCCGTCTGAGTGCACTCTTTCTTCCGGTCACCAACTCCAANGGAGGAGTCTATGGAGGCCCCGGCGGGGTCCAAATCCTCAAACAAATCGTGGGGGGTCTTTTCATCATTGGGTGGAACCTTGTGGCCACTTCCATCATTTGTTTAGTCATAGGTTTAATTGTTCCGCTCAGGATGACGGAGGAAGAGTTGCTGATTGGGGATGACGCGGTTCATGGGGAAGAAGCTTATGCACTATGGGGCGATGGAGAGNAACTTAGCCTCTACACTGATGATACCACCCGCCATGGAATATCAATGGCCTCAATTGGTGCCACACAAGTTGTCTAGACTCTACACCATATATTATATAGAGGGGTGATACATGGACACCCCACCACCCTTCTCATACCTCATCCCAATGAGGTGGGAGGTGTGGGGTGGGGGTCNATATCATTAGGGTATTATATANAAGAAAGAATAATGTTTCATAGACACCTCAACCNATCTATACCTAGTGAGAGAAANAAATAAATGAGAGATAATTGATAGATGTGTAGTGATATGATGTGATAAGAAGAAAGAGATTAGAGGTGTTGGATGAATGTGGAAGATTAATTGATAGTTTAATAGTTGGAATTAATAGTTTAATTGATTATTCTTTATTGTTTTTATGCATGCGTGTCATTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00200	62931	67819	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015696 ammonium transport

GO:0072488 ammonium transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0008519 ammonium transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000200s00011152.1	PF00909.16	Ammonium_transp	31	456	1.00E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.101
SRR1783600	control	0.101
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.058
DRR006522	Root Winter glycyrrhizin high producing strain	0.120
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	104.661
DRR006526	Leaf Summer glycyrrhizin high producing strain	104.550

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.772
SRR2868004	Drought Stress (root)	1.552
SRR2967015	Control (root)	2.219

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	179.088
SRR9715740	Leaf	235.261
SRR9715741	Leaf	98.515
SRR9715739	Root	0.082
SRR9715742	Root	0.204
SRR9715743	Root	0.094

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.456
SRR8749028	MeJA induced 9h	0.273
SRR8749029	MeJA induced 9h	1.323
SRR8749030	Uninduced	0.139
SRR8749031	Uninduced	0.040
SRR8749032	Uninduced	0.235

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.033
SRR8400027	Control - Root	0.751