Gene detail

Gene detail information of Glyur000200s00011150

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21120.1	4.00E-120	Protein of unknown function (DUF803)
NR	XP_004503879.1	0	PREDICTED: magnesium transporter NIPA3-like [Cicer arietinum]
Swissprot	tr\|Q8GWX2\|NIPA6_ARATH	4.00E-149	Probable magnesium transporter NIPA6
trEMBL	tr\|G7LFS0\|G7LFS0_MEDTR	0	Magnesium transporter NIPA2-like protein {ECO:0000313\|EMBL:AET04864.1}

Sequence

Transcript Sequence

>Glyur000200s00011150.1
ATGAGCTCGAGCAACTTGACGGGGCTTGTGTTGGCGGTGGTTTCGAGTGCTTTCATTGGCTCCAGCTTCATCATCAAGAAAAAGGGTCTCCAACTCGCCGGGGTCAACGGCCCTCGTGCCAGTGTTGGAGGGTATGGTTATTTGCTTCAGCCTCTCTGGTGGATCGGAATGATTACCATGATTGTTGGAGAGATGGCAAATTTTGTGGCATACACTTACGCCCCNGCTGTGCTTGTCACTCCATTGGGCGCTTTGAGTATTATTGTTAGTGCTGTCTTGGCACATTTCCTCTTGAAGGAAAAGCTGCGGAAAATGGGCATTCTGGGGTGTCTTCTATGCATTGTTGGATCCACTATCATTGTACTCCATGCACCTGAAGAGATGTCTCTTAGTTCTGTACAAGAGATATGGGAATTGGCCATTCAACCTGCATTCCTCTTGTACACGACATCGGCNATTGCCGTGACATTGGTCTTGGTTCTGTATTGTGCTCCCCGCTATGGCCAAACTAATGTTTTGGTTTATATTGGAATATGTTCTGTAATTGGGTCCTTGACTGTCATGAGTGTGAAAGCAATTGGCATTGCGATAAAACTTACACTAGAAGGTGTAAACCAGTTTTTCTACTTTCAGACATGGATTTTTACAATGGTTGCTATCACCTGTGTCATTGCCCAACTAAATTACCTTAATATGGCATTGGATAACTTTAACACAGCAGTTGTTTCTCCAATCTATTATGCATTGTTCACAGCTTTTACAATATTAGCCAGCGCAATCATGTTTAAGGACTATTCTGGTCAAANTATAAGCAGTATTGTGTCAGAGCTATGTGGTTTCATCACTGTCTTATCTGGAACAACTCTANTGCACAGTACAAGAGAGCCAGATCCTCCAGACATTGCAGATTTATACACACCATTGTCTCCAAGAGTATCATGGTATATCCAAGGCAACAATGAATCCTGGAAACAGAAGGAGGAAGATGCATCACCCTTTAATTTAATAGCAATTATACGGCAAGATCATTTCAAGTGACAGAGTTGCCTTAAACTGCAAGAAGTTTGATCTATCATGTGCTATTCATTCATTGAGCTAAACATTACATCCTTACTTCTCATATTTCTTAAGCAACAGAAATGTGGCAGTACTATGGGGGTTTGGCTATGACCCCATAAATTTGATTCCATCACATTGTGCAGGCAGAGAGGAGCCAGTGCTTCCCTTTTTCAGAATCTGTTGGTANCATGTGAAGTGAAGGCTTGGGTGCTAATGTTTGAAAGGGGTGATTAATCACCCAGTTTGCATTTCTTTCCCCAGTGTATTTCTTATTGGTTCTTCCCACACCACCTAGTTTTTTTTAATTTATTATTGTTATTTTTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00200	54207	58345	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015693 magnesium ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015095 magnesium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000200s00011150.1	PF05653.9	Mg_trans_NIPA	2	295	1.10E-131

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.506
SRR1783600	control	6.405
SRR1783602	moderate drought stress	6.508
SRR1811619	moderate drought stress	6.420

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.467
DRR006520	Root Summer glycyrrhizin high producing strain	5.345
DRR006521	Root Winter glycyrrhizin high producing strain	8.041
DRR006522	Root Winter glycyrrhizin high producing strain	7.719
DRR006523	Root Summer glycyrrhizin low producing strain	5.462
DRR006524	Root Summer glycyrrhizin low producing strain	5.542
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.924
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.388

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.886
SRR2868004	Drought Stress (root)	9.305
SRR2967015	Control (root)	9.983

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.818
SRR9715740	Leaf	14.806
SRR9715741	Leaf	13.079
SRR9715739	Root	3.608
SRR9715742	Root	5.848
SRR9715743	Root	4.617

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.889
SRR8749028	MeJA induced 9h	23.784
SRR8749029	MeJA induced 9h	49.782
SRR8749030	Uninduced	32.915
SRR8749031	Uninduced	43.525
SRR8749032	Uninduced	34.782

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.831
SRR8400027	Control - Root	10.855