Gene detail information of Glyur000200s00011148 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G34320.1 | 0 | Protein of unknown function (DUF668) |
| NR | XP_004503877.1 | 0 | PREDICTED: uncharacterized protein LOC101498298 isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7LFS2|G7LFS2_MEDTR | 0 | DUF668 family protein {ECO:0000313|EMBL:AET04866.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00200 | 39761 | 47179 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000200s00011148.1 | PF11961.3 | DUF3475 | 162 | 217 | 7.30E-23 |
| Glyur000200s00011148.1 | PF05003.7 | DUF668 | 382 | 467 | 1.40E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.427 |
| SRR1783600 | control | 5.346 |
| SRR1783602 | moderate drought stress | 6.094 |
| SRR1811619 | moderate drought stress | 5.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.358 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.043 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.533 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.101 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.572 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.556 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.972 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.962 |
| SRR2868004 | Drought Stress (root) | 35.358 |
| SRR2967015 | Control (root) | 25.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.303 |
| SRR9715740 | Leaf | 16.848 |
| SRR9715741 | Leaf | 39.174 |
| SRR9715739 | Root | 2.437 |
| SRR9715742 | Root | 11.138 |
| SRR9715743 | Root | 10.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.046 |
| SRR8749028 | MeJA induced 9h | 27.601 |
| SRR8749029 | MeJA induced 9h | 19.701 |
| SRR8749030 | Uninduced | 53.177 |
| SRR8749031 | Uninduced | 53.490 |
| SRR8749032 | Uninduced | 15.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.526 |
| SRR8400027 | Control - Root | 12.825 |