Gene detail

Gene detail information of Glyur000200s00011146

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G24290.2	MAC/Perforin domain-containing protein
NR	XP_004503876.1	PREDICTED: MACPF domain-containing protein At4g24290-like [Cicer arietinum]
Swissprot	tr\|Q9STW5\|MACP2_ARATH	MACPF domain-containing protein At4g24290
trEMBL	tr\|G7LFS3\|G7LFS3_MEDTR	MACPF domain protein {ECO:0000313\|EMBL:AET04867.1}

Sequence

Transcript Sequence

>Glyur000200s00011146.1
GTACAATAATACTACAGCTACTGCAGCATTCCTTTGACTATTGACATTAGATAGACGCCTCCTTCCTTCTTCTCGTCTCGTGAACTCTCTCTATTATTGCTTTTGCTTTTGGTTTTGTCTTCTGCATCTTCATTCATTCTTTCATTCTTCAGAATAAAACAACACATCACAACACCTGTTTCAGAAGAAGAAGAAGAATATGTCAGGGAAGAAGAAGAAGGGNTTGGATGCAGAGGATGTAATAAAGTCGATTGGGTTAGGTTACGATCTGACCAACGATATAAGGCTCAAATCCTGCAAGTATGACTCCAGATTGATCGCCATCGACCACGACAACCTTCGAACAGTTGAGCTCCCTGGCCGTGTTTCCATCCCCAATGTCCCCAAATCTATCAAATGGGATAAAGGGGACCGCATGAGATTGTGCTCCGATGTTCTCTCTTTTCAGCAGATGTCAGAGCAGTTCAACCAGGAGCTGTCACTGTCTGGTAAGATACCAACGGGCCATTTCAATGCTGCTTTTGAGTTCACAGGAGTTTGGCANAGAGATGCTGCCAACACCAAGAGCCTTGCTTTTGATGGTGTCTCCATTACACTCTACAACATAGCACTTGAGAGAACCCAGTTACTTCTTAGTGATCATATCAAACAAGCTGTTCCTTCGNCTTGGGATCCCGCTGCATTGGCAAGGTTCATTGAGAAATATGGAACCCATGTTGTGGTTGGGGTGAAAATAGGGGGAACCGATATAATTTATGCAAAGCAGCAGTACTCTTCTCCTCTCCAACCTACTGATGTACAGAAAAAACTGAAGGACTTGGCAGACGAATTATTCATAGGCCAGGCTGGACAGCATAACAGTAATCATGGGGGGCTTAATGCAAAAGAAAAGCTTATGATGGACAATGGGCTAGGTTTCATGGACATTCAAGCTCGTTCCTATCGTGAATTAGAGGTGCAGGATATCAAGTTTATGTACAAGAGGAAAGGTGGAAATGGGAAAAAATATCTGACTCATAATGAGTGGTGCCAAACTGTTCTATCTCAACCTGATGTGATATCAATGTCATTCATACCAATTACATCTCTACTTGGTGGAATAAATGGGAGTGGATATTTAACTCATGCCATAAATCTCTATCTACGATATAAACCACCAATCGAAGAACTGCATCAATTTTTGGAATTCCAGCTTCCAAGGCAATGGGCCCCTGTATTTGGTGAGCTCACCCTTGGTCCTGAAAGGAAATCACAAAATTCTGCATCATTACAGTTCAGTTTCATGGGTCCTAAGCTCTATGTAAACACAACACCGGTTGATGTAGGAAAGAAGCCCGTGACAGGCCTTCGATTGTATTTGGAAGGAAAGAAAAGCAACTGCTTGGCAATCCATTTACAGCACCTCTCCTCCCTGCCCAAGACATTCCAACTTCAGGATGATGAGCCTAATGGGAATGTATCTAATGCCTCTTCGGAACGTAAATACTATGAAAAGGTCCAGTGGAAGAGTTTCTCTCATGTTTGCACAGCTCCTGTTGAATCAGACGACGACAACTCTGTTGTGACCGGGGCTCACTTCGAAGTTGGGGATACTGGTCTGAAGAAAGTTCTATTCCTAAGACTTCATTTCAGTAAAGTTGCCGGTGCAACCCGCGTGAGAGCACCCGAGTGGGATGGTTCTCCTGGCTTGACCCAGAAATCCGGAATAATCTCAACTTTGATCAGCACCCGCTTCTCAGGTCCACAAAAACAACCACCAGCACCACGGGCATCTGACGTATATGTCAACTCTGCATTATACCCAGGGGGGCCTCCGGTGGCTGCTCAGTCGCCTAAACTTCTGAGGTTTGTTGACACAACAGAAATGACAAGAGGACCACAAGACTTGCCTGGCTACTGGGTTGTGTCTGGGGCAAGGCTTTATGTGGAGAAGGGTAAAATATCACTCAAAGTAAAATATTCTCTTTTAACCGTGATTTTACCTGATGATGAAGAGGCCACAAGTTATTGAATGATCTCATCAGATAAGTTGAATGAGATGNGCGTGTGTACATAATAGTGTCTGATTCTTTTTCCATTGTACATTTGCTCTATTCATTATAGGTTACTACTTGATGTTGTCATTATTTGTGTATACCCACACGCAGATCTTTTGGGGGAATTCCTTGATCTAGTCTTGAGAAAAAGCTTGTGTGATCATGCCCGTTACATCTTTTTGCCTGTATGTTTTCAATGTATTTCTATGTGTCATTGGTGTACTCCCATGCAGACAATGAAAAGGGTATTCATTTCATACCCTACTGGAACAGTTGGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00200	30939	37259	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000200s00011146.1	PF01823.14	MACPF	103	314	1.50E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.781
SRR1783600	control	26.991
SRR1783602	moderate drought stress	25.545
SRR1811619	moderate drought stress	25.361

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.823
DRR006520	Root Summer glycyrrhizin high producing strain	31.703
DRR006521	Root Winter glycyrrhizin high producing strain	47.218
DRR006522	Root Winter glycyrrhizin high producing strain	46.049
DRR006523	Root Summer glycyrrhizin low producing strain	57.067
DRR006524	Root Summer glycyrrhizin low producing strain	56.192
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.188
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.238

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.734
SRR2868004	Drought Stress (root)	71.356
SRR2967015	Control (root)	63.420

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	57.387
SRR9715740	Leaf	35.164
SRR9715741	Leaf	66.819
SRR9715739	Root	20.578
SRR9715742	Root	53.953
SRR9715743	Root	47.528

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.538
SRR8749028	MeJA induced 9h	74.870
SRR8749029	MeJA induced 9h	80.282
SRR8749030	Uninduced	127.369
SRR8749031	Uninduced	189.587
SRR8749032	Uninduced	119.770

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.087
SRR8400027	Control - Root	43.131