Gene detail information of Glyur000200s00011142 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24290.2 | 5.00E-37 | MAC/Perforin domain-containing protein |
| NR | XP_003630393.1 | 1.31E-89 | MAC/Perforin domain containing protein [Medicago truncatula] |
| Swissprot | tr|Q9STW5|MACP2_ARATH | 5.00E-42 | MACPF domain-containing protein At4g24290 |
| trEMBL | tr|G7LFS5|G7LFS5_MEDTR | 5.00E-90 | MACPF domain protein {ECO:0000313|EMBL:AET04869.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00200 | 5345 | 6186 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.064 |
| SRR1783600 | control | 1.970 |
| SRR1783602 | moderate drought stress | 1.092 |
| SRR1811619 | moderate drought stress | 1.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.149 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.236 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.908 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.779 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.752 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.163 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.365 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.769 |
| SRR2868004 | Drought Stress (root) | 4.096 |
| SRR2967015 | Control (root) | 2.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.701 |
| SRR9715740 | Leaf | 3.875 |
| SRR9715741 | Leaf | 5.881 |
| SRR9715739 | Root | 0.950 |
| SRR9715742 | Root | 0.678 |
| SRR9715743 | Root | 0.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.937 |
| SRR8749028 | MeJA induced 9h | 1.150 |
| SRR8749029 | MeJA induced 9h | 2.575 |
| SRR8749030 | Uninduced | 1.546 |
| SRR8749031 | Uninduced | 0.484 |
| SRR8749032 | Uninduced | 0.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.002 |
| SRR8400027 | Control - Root | 1.987 |