Gene detail information of Glyur000199s00018227 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G77000.2 | 9.00E-154 | RNI-like superfamily protein |
| NR | XP_006595563.1 | 0 | PREDICTED: uncharacterized protein LOC100793275 isoform X1 [Glycine max] |
| COG | YP_008917.1 | 1.00E-09 | hypothetical protein pc1918 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|O49286|SKP2B_ARATH | 0 | F-box protein SKP2B |
| trEMBL | tr|I1MAC7|I1MAC7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G26660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00199 | 212815 | 216315 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000199s00018227.1 | PF12937.2 | F-box-like | 52 | 86 | 7.30E-07 |
| Glyur000199s00018227.1 | PF13516.1 | LRR_6 | 165 | 188 | 0.74 |
| Glyur000199s00018227.1 | PF13516.1 | LRR_6 | 218 | 241 | 0.22 |
| Glyur000199s00018227.1 | PF13516.1 | LRR_6 | 244 | 268 | 0.062 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.172 |
| SRR1783600 | control | 11.386 |
| SRR1783602 | moderate drought stress | 42.647 |
| SRR1811619 | moderate drought stress | 42.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 42.977 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.517 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 175.808 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 170.928 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.044 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.543 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.730 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.380 |
| SRR2868004 | Drought Stress (root) | 6.071 |
| SRR2967015 | Control (root) | 18.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.717 |
| SRR9715740 | Leaf | 1.378 |
| SRR9715741 | Leaf | 2.027 |
| SRR9715739 | Root | 9.738 |
| SRR9715742 | Root | 18.730 |
| SRR9715743 | Root | 15.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 40.712 |
| SRR8749028 | MeJA induced 9h | 21.337 |
| SRR8749029 | MeJA induced 9h | 18.786 |
| SRR8749030 | Uninduced | 5.283 |
| SRR8749031 | Uninduced | 1.455 |
| SRR8749032 | Uninduced | 4.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.471 |
| SRR8400027 | Control - Root | 3.538 |