Gene detail

Gene detail information of Glyur000199s00018221.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G25800.1	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NR	XP_006593769.1	PREDICTED: small RNA degrading nuclease 5-like isoform X1 [Glycine max]
Swissprot	tr\|Q8L7M4\|SDN5_ARATH	Small RNA degrading nuclease 5
trEMBL	tr\|I1LXA9\|I1LXA9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G09210.1}

Sequence

Transcript Sequence

>Glyur000199s00018221.1
TGACAAAAAAAAAAGAGTTAAGAGTTAAGACATTCTGTGTTCTGTTTTTCGTTTTAATTTTTATTTTATTTATTTAAGTTAGTCTCCGAACAAAGTCCCAGGTAGCAGCTGCCGCGAGAATGGATTCTTCGTCGGAGAGGAAAAGCGAAGCCCTCTGTAGTGTCGAAGAAGAGGATTCTACGGACAACAACAAATGCAGCAACTTCTACGATGTCTATGGACCCCAAGGCAAGGCTGATGTTGTTTTCAAGTTAGATGATAATTCAACTCTGAATCTTACTGACATTCAAGGACTTGTAACTTGGGTGCTTGGTGAAGGATTGATGCCATCATGGGTTTTTATCAAGAATAAGCCTCTTATTCCCAAAGTGGTTATACTCTATATTCCGGGCCTGGATGCAGATTTGTTCTTGTCATATTCTAAAATGCTTCCCAATTTAAAAAAATTATTTGGCAAACCAAGGCCGGTCCTTGCTCTCAGCTGTGTATCAGATGGTATGCAGACAGTAGATGCACTCCTAACATGCAAGCAGAAAAGAAAGAGGGATCAAAATGATTCAATTTTGAAGAAATCTACTCTCATATCTCATCAAGAAGAAAACTGTGGTGGCACTGACAATCTATCGTTTATGGAGCTTACAAAAGACATACCTTTCCCTGTTACATACTATACACTAACAGAGAAAGATCTGGAAGAGAATGGATATTCTGTTAATAAGCCAGGTTTTCTTTCTACTCTGCCTGCTCCTGTGGGATCTCCTTTTTATGAGATGTTGGCAGTTGACTGTGAGATGTGCATAACAAGTGAAGGTTTTGAGCTGACAAGAGTTACTCTAGTGGATTTCAGAGGACAGGTTTTGTTAGATAAATTGGTNAAACCGTCAAATGCTATCACTGATTACAATACAAGATTTAGTGGAATAACACCTGAGATGTTAGATGGGGTGACGACAAGACTGAGAGACATTCAGGAAGAGTTTTTAAAACTGGTTTACAAAGAAACTATCCTTGTTGGGCATTCTTTGGAAAATGATTTATTGGCATTGAAGATATCTCATGACTTGGTCATTGACACAGCAGTATTATACATTAACCCCAGAAGGTCATCCCATAAATCTGCTCTAAGGTTTCTTGCTAAAAGATTTCTNTCAAGGGAGATACAGCAATCAGAGAATGGACATGACAGCATCGAAGATGCTAGANCTACCATGGAATTGGCACTATTGAAGATCAGAAATGGCAAAGATCTGTTACCATTCATATGGCCTGACTTTGGTTCCCCTCCATGCTTTATGCGGAAAAAGCTCCTTTCCATTTTGNGCGAGTCTGGCAAAATTTCATCATTGATTGATGACATATCTATAGTAAAACGATACACCTCAGAGTCCTCTAACGCAATCCCAGTGACCTCTGATGAAGAAGCACTTGTAAAGACCAACAAGGAGTTGAAGAATGAAAAGGTACATTTTATCTGGACTCAGTTTTCAGAGTTACACTCGTACTTGAAGAAACAAGCTGAGGATTCAGAGAACTTGAATAAAAAACTTGCAGAGATGATGGCATTACATACATGTCAGAAGAATGATTCGAAAGGGAAAGGCTTCAAGTTGAACAAATCTGCTGAGCTGAAGGGAATTCTGGCTCGCATGGATACTAGAGTTCATAAGCTGTATGCGTCATTACCAACAAATGCGATGATGATAGTTTGCACCGGTCATGGAGACACAGCTGTTGTCCGCAGGTTGAGGAAAATGCTTGCGGAGGAGAATGAGAATGAAAGTAATTTATGTCGTGAAAAGATTGTGGAAATTTTGGAAGAGTTTCAGGCTAGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTAAAGCACTGATTATGAAATAATACAAAATGAACAAAAGTTATTTTTTATAACCTGTGGCCAGGACCCATAATTTGATGATAAACGTTCTAAATGTAAATATTGGTTAGGTCTCAAGGCAAGAGTTCTACACGTGACATAACGATGTCATGAAGAAAAGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00199	138908	147036	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14570	REX1, REXO1, RNH70	EC:3.1.-.-	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003676 nucleic acid binding

GO:0003824 catalytic activity

GO:0004527 exonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000199s00018221.1	PF00929.19	RNase_T	219	366	7.90E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.856
SRR1783600	control	3.738
SRR1783602	moderate drought stress	3.461
SRR1811619	moderate drought stress	3.443

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.703
DRR006520	Root Summer glycyrrhizin high producing strain	4.573
DRR006521	Root Winter glycyrrhizin high producing strain	4.519
DRR006522	Root Winter glycyrrhizin high producing strain	4.297
DRR006523	Root Summer glycyrrhizin low producing strain	5.981
DRR006524	Root Summer glycyrrhizin low producing strain	6.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.586
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.422

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.441
SRR2868004	Drought Stress (root)	9.108
SRR2967015	Control (root)	9.585

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.152
SRR9715740	Leaf	8.873
SRR9715741	Leaf	8.223
SRR9715739	Root	0.405
SRR9715742	Root	3.115
SRR9715743	Root	2.332

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.942
SRR8749028	MeJA induced 9h	9.191
SRR8749029	MeJA induced 9h	5.874
SRR8749030	Uninduced	5.092
SRR8749031	Uninduced	3.418
SRR8749032	Uninduced	2.867

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.052
SRR8400027	Control - Root	9.045