Gene detail information of Glyur000199s00018219 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15360.1 | 6.00E-39 | thioredoxin M-type 4 |
| NR | AFK40516.1 | 1.11E-100 | unknown [Lotus japonicus] |
| COG | YP_007047706.1 | 1.00E-47 | thioredoxin [Cyanobium gracile PCC 6307] |
| Swissprot | tr|P07591|TRXM_SPIOL | 8.00E-68 | Thioredoxin M-type Md (Precursor) |
| trEMBL | tr|I3SJS4|I3SJS4_LOTJA | 4.00E-101 | Uncharacterized protein {ECO:0000313|EMBL:AFK40516.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00199 | 133303 | 134445 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000199s00018219.1 | PF00085.15 | Thioredoxin | 77 | 178 | 2.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.067 |
| SRR1811619 | moderate drought stress | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.194 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.192 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 896.853 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 891.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.449 |
| SRR2868004 | Drought Stress (root) | 0.281 |
| SRR2967015 | Control (root) | 0.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 526.760 |
| SRR9715740 | Leaf | 619.840 |
| SRR9715741 | Leaf | 359.177 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.673 |
| SRR9715743 | Root | 0.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.275 |
| SRR8749029 | MeJA induced 9h | 0.224 |
| SRR8749030 | Uninduced | 0.186 |
| SRR8749031 | Uninduced | 0.143 |
| SRR8749032 | Uninduced | 0.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.015 |
| SRR8400027 | Control - Root | 0.047 |