Gene detail

Gene detail information of Glyur000199s00018211

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77110.1	2.00E-108	Auxin efflux carrier family protein
NR	NP_001267510.1	6.84E-174	uncharacterized protein LOC100800139 [Glycine max]
Swissprot	tr\|Q9SQH6\|PIN6_ARATH	2.00E-140	Probable auxin efflux carrier component 6
trEMBL	tr\|I1MAE5\|I1MAE5_SOYBN	3.00E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G27900.1}

Sequence

Transcript Sequence

>Glyur000199s00018211.1
ATGCTCGTAGCCTATGGTTCGGTGAAATGGTGCAAGATGTTCACACCGGACCAGTGTTCCGGAATTAACCGTTTCGTGGCGGTTTTTGCTGTTCCGGTTCTCTCCTTCCACTTCATTTCCCTAAACAACCCATACCAAATGGACACAAAGTTCATCATAGCTGACACCCTCTCCAAGCTACTCGTTCTCTTCTTCCTCTCCCTTTGGGCCATTTTTTTCTCTAGATCAGGCTCCTTGGATTGGCTCATCACGCTTTTCTCGCTTGCCACTTTGCCCAACACACTCGTCATGGGTATCCCTCTCCTACAAGCCATGTATGGTGACTTCACACAAAGCCTCATGGCTCATGGTCCTGATTGGAAAGTGCCATTGGGAAGAAGGGATAGTTTAACAGCAAACTTTACCCTTGCCAATCAAAATCTTCCAGGTCCCTCTTTCAACCTAACTCGACTTAAAGCCGCATTTTCTGATCAAGGCCTCAACACTACTGATCTAGTTGCACTCTCAGGTGCTCATACAATTGGCAGAGGTCAATGCAGATTTTTCGTTGACCGATTATACAATTTCAGTGGCAGTGGCAATCCTGATTCAACTCTCAACACAACCTATTTACAAACACTGAGAACAATATGCCCCAATGGTGGACCTGGTACCAACCTCACCAATTTGGACCCAACCACTCCTGACACATTCGACTCCATCTACTACTCCAATCTCCAAATTGGAAAGGGCTTGTTTCAGAGTGACCAAGAGTTGTTTTCCACTAGTGGTGCAGATACCATTCCCATCGTCAACAGTTTCAACAGTAACCAAACTCTCTTCTTTGAAAACTTTAAGGCCTCGATGATAAAAATGGGTAATATTGGAGTGCTAACAGGATCCCAAGGAGAAATCAGAAAACAATGTAACTTTGTTAATGGGAATTCTGTTGGACTGGCTACTACTGTTACCGATGAATCTTCAGAAGATGACATGTTTTTTTATTGTAATTATTTTGGCTACTATATGACAGATAAAGAAATTAGCTTCAGAGACTGCACCAAAGTCTCAATGGCAGGGGAAGCTGCAGAACCCAAAGACGCAATTGCAAGTAACCAGAAAATGCCACACGCCTTTGTCATGTTAAGGCTTATACTTTTCGTAGTTGGAAGAAAACTTTCTCGAAACCCGAATACATATTCTAGTGTATTAGGACTTCTTTGGTCTCTAATCTCCTTCAAATGGAATATAGAAATGCCTAGTCTGATCAAATCATCTATCAAAATCATCTCGGATGCAGGCCTTGGGATGGCTATGTTTAGCTTAGGGCTTTTCATGGCACTTCAGCCTCGTATCATTGCTTGTGGTACCAAAAGAGCAGCCATGGGAATGGCCATCCGCTTCCTATGCGGACCTCTTGTAATGTCAGTATCCTCCATTGCTATTGGATTGAGAGGAGAAAAATTGCATACTGCCATTGTACAGGCTGCTCTTCCACAAGGGATAGTGCCATTTGTATTTGCAAGGGAATATGGGCTGCATCCTGATATTTTGAGCACGGGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00199	85140	90630	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055085 transmembrane transport

GO:0055114 oxidation-reduction process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000199s00018211.1	PF03547.13	Mem_trans	1	114	8.80E-45
Glyur000199s00018211.1	PF00141.18	peroxidase	115	269	4.70E-35
Glyur000199s00018211.1	PF03547.13	Mem_trans	318	514	1.20E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.426
SRR1783600	control	2.531
SRR1783602	moderate drought stress	1.177
SRR1811619	moderate drought stress	0.990

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.655
DRR006520	Root Summer glycyrrhizin high producing strain	2.351
DRR006521	Root Winter glycyrrhizin high producing strain	0.443
DRR006522	Root Winter glycyrrhizin high producing strain	0.466
DRR006523	Root Summer glycyrrhizin low producing strain	1.894
DRR006524	Root Summer glycyrrhizin low producing strain	1.398
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.283

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.745
SRR2868004	Drought Stress (root)	23.563
SRR2967015	Control (root)	20.149

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.632
SRR9715740	Leaf	3.351
SRR9715741	Leaf	8.172
SRR9715739	Root	2.011
SRR9715742	Root	5.818
SRR9715743	Root	4.224

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.879
SRR8749028	MeJA induced 9h	39.662
SRR8749029	MeJA induced 9h	250.500
SRR8749030	Uninduced	27.006
SRR8749031	Uninduced	129.749
SRR8749032	Uninduced	97.470

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.539
SRR8400027	Control - Root	9.501