Gene detail information of Glyur000199s00018208.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G43800.16.00E-156Plant stearoyl-acyl-carrier-protein desaturase family protein
NRKEH40454.10stearoyl-acyl-carrier desaturase [Medicago truncatula]
COGYP_006369323.13.00E-22Fatty acid desaturase [Modestobacter marinus]
Swissprottr|Q84VY3|STAD6_ARATH0Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic (Precursor)
trEMBLtr|A0A072VEM1|A0A072VEM1_MEDTR0Stearoyl-acyl-carrier desaturase {ECO:0000313|EMBL:KEH40454.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold001997648079001+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K03921FAB2, SSI2, desA1EC:1.14.19.2 1.14.19.11 1.14.19.26Fatty acid metabolismmap01212
Fatty acid biosynthesismap00061
Biosynthesis of unsaturated fatty acidsmap01040


Gene Ontology

biological_process

GO:0006631  fatty acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0045300  acyl-[acyl-carrier-protein] desaturase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000199s00018208.1PF03405.9FA_desaturase_21803682.00E-91


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.402
SRR1783600control15.286
SRR1783602moderate drought stress16.562
SRR1811619moderate drought stress16.329

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain53.322
DRR006520Root Summer glycyrrhizin high producing strain54.174
DRR006521Root Winter glycyrrhizin high producing strain836.159
DRR006522Root Winter glycyrrhizin high producing strain812.935
DRR006523Root Summer glycyrrhizin low producing strain81.850
DRR006524Root Summer glycyrrhizin low producing strain81.444
DRR006525Leaf Summer glycyrrhizin high producing strain0.717
DRR006526Leaf Summer glycyrrhizin high producing strain0.725

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)30.726
SRR2868004Drought Stress (root)16.648
SRR2967015Control (root)14.383

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf0.047
SRR9715740Leaf0.180
SRR9715741Leaf0.115
SRR9715739Root30.359
SRR9715742Root30.444
SRR9715743Root31.329

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h507.194
SRR8749028MeJA induced 9h736.957
SRR8749029MeJA induced 9h872.531
SRR8749030Uninduced308.632
SRR8749031Uninduced182.753
SRR8749032Uninduced233.462

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root69.672
SRR8400027Control - Root85.730

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved