Gene detail

Gene detail information of Glyur000199s00018203.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47670.1	3.00E-34	nuclear factor Y, subunit B6
NR	XP_003556590.1	1.03E-44	PREDICTED: nuclear transcription factor Y subunit B-6 isoform X1 [Glycine max]
Swissprot	tr\|Q84W66\|NFYB6_ARATH	2.00E-42	Nuclear transcription factor Y subunit B-6
trEMBL	tr\|I1NCV5\|I1NCV5_SOYBN	4.00E-45	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G00240.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00199	55194	56333	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component

GO:0005622 intracellular

GO:0005634 nucleus

molecular_function

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000199s00018203.1	PF00808.18	CBFD_NFYB_HMF	50	114	5.90E-20

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.118
SRR1783600	control	0.119
SRR1783602	moderate drought stress	0.066
SRR1811619	moderate drought stress	0.116

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.174
DRR006520	Root Summer glycyrrhizin high producing strain	0.172
DRR006521	Root Winter glycyrrhizin high producing strain	0.359
DRR006522	Root Winter glycyrrhizin high producing strain	0.352
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.206
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.249

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.153
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.200
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.512
SRR8749028	MeJA induced 9h	0.163
SRR8749029	MeJA induced 9h	0.344
SRR8749030	Uninduced	0.747
SRR8749031	Uninduced	0.365
SRR8749032	Uninduced	1.429

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.144
SRR8400027	Control - Root	0.280