Gene detail

Gene detail information of Glyur000199s00018202

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G77220.1	Protein of unknown function (DUF300)
NR	XP_007161485.1	hypothetical protein PHAVU_001G073000g [Phaseolus vulgaris]
trEMBL	tr\|V7CTL1\|V7CTL1_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW33479.1}

Sequence

Transcript Sequence

>Glyur000199s00018202.1
ATGGGTTTGGCGGGTATTCTGTGTTATTCCATATTTCTTTTTACCCCCGTTGGGGCTACTCACAGAGCATTTAATATGTGGCCTCCAAACCCCGGTGGAGAGTCCATAGGAACTGTCAGTTGGACAGTCTTCAGTTCAAGTATATTTGTGCTTGTTGCTCTGGTTCTCTCCATATATTTAATATTTGAGCATTTAGCTGCCTATANTCAGCCTGAGGAACAGAAGTTTTTGATTGGCCTCATTTTAATGGTTCCAGTTTATGCATTGGAATCATTTTTGTCAATATTGGATTCTGGTGCAGCATTTAACAGTGAGGTTATCCGGGAATGCTATGAGGCATTTGCCTTATACTGCTTTGAGAGATACCTGATAGCTTGCTTAGGTGGTGAGGAGAAAACAATTGAATTTATGGAAAGTATGAGCTTAACAGACTCCAGCATTCCTCTTCTGAAAGAAGCATATGCATATGGAGTTGTAGAGCATCCATTTCCCTTAAATTTTCTCATAAGGGATTGGTATCTCGGCCCTGATTTCTATCAATCTGTGAAAATAGGCATTGTACAATATATGTTACTGAAGATGATCTGTGCATTACTGGCAATGATCCTCCAGTCCTTTGGTGTTTATGGAGAGGGGAAGTTTGAATGGAAATATGGGTACCCCTACTTGGCACTTATTCTTAATTTTAGCCAGACATGGGCCCTTTATTGCCTTGTACAGTTCTATTCTGTCACTAAAGATAAGTTGAAACCAATCAAACCATTGGCAAAGTTTCTGACTTTTAAGTCAATTGTTTTCCTGACATGGTGGCAAAGTGTGGCCATTGCATTTCTTTTTTATGTTGGAGCATTTAAAGGGTCATTGGCTCAGGAGTTGAAAACTCGTATACAAGACTATATCATCTGTATAGAGATGGGCGTGGCTGCTGTCGTGCACCTGTATGTCTTCCCTGCAACACCTTACAAAAGGGGAGAGAGGTGTGTCCGTAATGTAGCAGTGATGGCTAACTATGCATCACTAGGATCACCTCCTGACCCTGAGGAGATTCGAGACTCTGAGCGCTCAACTAGAATTTGGCTGGGAGGAGGACGTCACGAGAGAGAAAAGCCCATGAAATTTACCCATAGTGTTCGTGATGTGGTTGTTGGAAGTGGTGAAATTATTGTTGATGACATGAAATATACGGTTTCACACGTGGTAGAACCTGTTGAAAGGGGTATTGCAAAGATAAACAGAACCTTCCATCAGATATCAGAAAATGTGAAACNCCATGAGAAGCGGACGAGAAGCGCCAAGGATGANAGTTACCTTGTTCCCTTGCGTTCGCAGACAGCAGAATTTTCTGATGTTCATGATACTATGGTTGAAGGAAGTGTCAGTGATAGTGGCTTGCCCAGTAGAAAGAGACAGTATCTCCAATCCAAAGAACCAGCCACCAGATTTAGAAGATAGTGTTTGCAGTTCAAATTTATAATAAATAGTTTTTCACATAAAGGGGGTATTTCAAATTGATTTCGACGTGAATTTTTAAGCTACGTCGATACAATTTGGTGAATTTGTTAACATAGATGGTAGATGTCTAACATCACGTAACGAAAGAGGAATTGTCATGTGCATCCAAAGAGCTGAGGGCTGGCTGGCTGAGAAAGTACCCGCATTGGCATATCAACGATGCATCGTGTGAAATGTACCAGAAGTTGTAGTTGTTGAATACGTTTAGGCAGGGAAGGATGGAAATGATAACATATTTCAAATAAGATATTAAACTGATGTGTACGATNATATATGTACCAAAAGAATACTGGTGTGTACTATGATATTATATTATGATACAAAATACTTGGGACTATTTGGATCTATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00199	46076	49795	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000199s00018202.1	PF03619.11	Solute_trans_a	40	321	1.90E-102
Glyur000199s00018202.2	PF03619.11	Solute_trans_a	15	296	1.70E-102

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.225
SRR1783600	control	5.923
SRR1783602	moderate drought stress	8.151
SRR1811619	moderate drought stress	8.200

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.775
DRR006520	Root Summer glycyrrhizin high producing strain	12.922
DRR006521	Root Winter glycyrrhizin high producing strain	30.260
DRR006522	Root Winter glycyrrhizin high producing strain	29.215
DRR006523	Root Summer glycyrrhizin low producing strain	15.170
DRR006524	Root Summer glycyrrhizin low producing strain	15.292
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.384
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.334

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.409
SRR2868004	Drought Stress (root)	14.560
SRR2967015	Control (root)	12.782

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.174
SRR9715740	Leaf	18.463
SRR9715741	Leaf	16.215
SRR9715739	Root	4.254
SRR9715742	Root	10.658
SRR9715743	Root	8.399

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.561
SRR8749028	MeJA induced 9h	36.066
SRR8749029	MeJA induced 9h	56.078
SRR8749030	Uninduced	82.875
SRR8749031	Uninduced	61.891
SRR8749032	Uninduced	59.361

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.567
SRR8400027	Control - Root	12.581