Gene detail information of Glyur000199s00018199 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21326.1 | 1.00E-09 | VQ motif-containing protein |
| NR | XP_007141010.1 | 1.55E-37 | hypothetical protein PHAVU_008G159700g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LGD5|MKS1_ARATH | 7.00E-13 | Protein MKS1 |
| trEMBL | tr|V7B5A9|V7B5A9_PHAVU | 6.00E-38 | Uncharacterized protein {ECO:0000313|EMBL:ESW13004.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00199 | 18806 | 19399 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000199s00018199.1 | PF05678.9 | VQ | 62 | 91 | 1.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.133 |
| SRR1783600 | control | 2.263 |
| SRR1783602 | moderate drought stress | 3.167 |
| SRR1811619 | moderate drought stress | 3.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.183 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.188 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.183 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.179 |
| SRR2868004 | Drought Stress (root) | 7.459 |
| SRR2967015 | Control (root) | 8.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.342 |
| SRR9715740 | Leaf | 0.668 |
| SRR9715741 | Leaf | 1.391 |
| SRR9715739 | Root | 22.829 |
| SRR9715742 | Root | 11.278 |
| SRR9715743 | Root | 10.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.611 |
| SRR8749028 | MeJA induced 9h | 105.127 |
| SRR8749029 | MeJA induced 9h | 80.047 |
| SRR8749030 | Uninduced | 222.373 |
| SRR8749031 | Uninduced | 232.755 |
| SRR8749032 | Uninduced | 134.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.024 |
| SRR8400027 | Control - Root | 6.438 |