Gene detail

Gene detail information of Glyur000199s00018198

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23740.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_006596280.1	0	PREDICTED: probable inactive receptor kinase At4g23740-like isoform X1 [Glycine max]
COG	YP_003194814.1	9.00E-23	hypothetical protein RB2501_09035 [Robiginitalea biformata HTCC2501]
Swissprot	tr\|Q9SUQ3\|Y4374_ARATH	0	Probable inactive receptor kinase At4g23740 (Precursor)
trEMBL	tr\|I1MAH0\|I1MAH0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G29130.1}

Sequence

Transcript Sequence

>Glyur000199s00018198.1
ATGGGCAAGAAGCTTGGCCTCTTGTTCATTTACTCAACAATCTTCATGATTGGAGCGGTGTTCTTTGGTGTTGGAGCTGAACCAGTGGCAGATAAACAAGTTTTGCTTGATTTCCTTCACAACATTAATCACTCCTCTCATCTCAACTGGGATAAGAGATCTTCTGTATGCAAAAGCTGGACTGGAGTCACCTGCAACACTGACCGATCTCGAGTTATAGCCCTCCAGCTACCGAGAGCTGGATTGAATGGTCCAATTCCATCCAACACTCTTAGTCGCCTCTCAGAACTCCAGATTGTGAGTCTTGCATCAAATAGTATAACTGGTTCTTTCCCTTCTGGTTTCTCTGAGCTAAAGAATTTGACCTATCTCTTCCTTCAATTCAACAAATTTTCTGGTCCATTGCCATCAGATTTTTCAGTTTGGAATAATCTCACTGTTGCCAATTTATCCAACAATGATTTTAATGGGAGCATCCCTTTTACAGTTTCAAATTTGACTCATCTCACTTCTTTAGTCCTAGCCAACAACTCTCTTTCAGGTGAAATTCCTGATATCAATGTTCCTAGCCTGCAAGAGCTCAATTTGGCCAACAATAAACTTAGTGGGGCTGTGCCTAAATCCCTTCAGAGATTTCCAAGTTGGACCTTTTCTGGTAACAATCTTACCTCATCTTCTGCATATGCACTTCCTCCTGCTTTTCCTGTTCAATACCCAAATATTCATCCAAAAAGGAAAACCAAAGGACTCAGTGAACCAGCATTATTGGGGATCATCATTGGTGGCTGTGTGCTGGGGCTTGCAGCCATAGCAGCTTTTGTGATTGTCTGTTGCTATGAGAAACGTGGCGAAGATGGACAACCAATCAAGTCCCAGAAAAAAGAAGTCTCTGAGAAAAAAGAAGCTTCTGAAAGTCGAGAGAGAAACAAAATTGTCTTCTTTGAGGGTTGCAACCTTGTATTTGATTTGGAGGACTTGTTGAGAGCATCTGCTGAGGTGCTTGGAAAGGGAACATTTGGTACGGTATATAAGGCTGCTCTAGAGGATGCAACAACAGTAGCAGTGAAGAGGTTGAAGGAGGTCACGGTTGGAAAGCGTGAGTTTGAACAGCAGATGGAGATGGTGGGGAGGATTAGGCACGAGAATGTGGCTCCACTGAGGGCATATTACTATTCAAAGGAGGAGAAACTTATGGTATATGACTACTACGAACAGGGCAGTGTCTCAGCAATGTTGCATGGCAAAAGAGGGGTAGGAAGGATTTCTCTAGACTGGGACACCCGGTTGAGAATAGCAATTGGTACAGCAAGAGGCATTGCTCACATCCATGCTCTACATGGAGGGAAACACATCCATGGAAACATAAAAGCCTCAAACATCTTCCTAAACTCCCAAGGATATGGTTGTCTATGTGACATTGGTCTTGCAACAATGATGAGTCCAATGCCCCCACCAGCATTGAGGGCTACAGGATACCGTGCAGCGGAAGTAACAGACACGCGAAAAGCGACCCCGGCATCCGATGTCTACAGTTTTGGGGTCCTGCTACTTGAGCTTCTAACTGGGAAATCTCCCATATATGCCACTGGAGGTGAAGAGGTTGTCCACTTGGTTAGGTGGGTGAATTCTGTGGTTAGAGAGGAGTGGACAGCAGAAGTGTTTGATGTGGAGTTGCTGAGGTGTCCAAATATAGAGGAAGAAATGGTTGAGATGCTACAAATAGGGATGGCATGTGTTGTGAGAACACCAGATCAAAGACCAAAAATTGCAGAAGTGGTGAGAACGGTGGAGGAAATTCGTACTGGGAATAGACCATCCACAGAGTCTAGATCGGAAGGTTCTACTCCAATCCCTCATGCAATTGAGACACCTTCTACACCTCTTCCACATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00199	9401	11900	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000199s00018198.1	PF08263.7	LRRNT_2	31	66	3.00E-08
Glyur000199s00018198.1	PF00560.28	LRR_1	190	210	0.26
Glyur000199s00018198.1	PF00069.20	Pkinase	332	594	1.60E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.002
SRR1783600	control	2.980
SRR1783602	moderate drought stress	4.409
SRR1811619	moderate drought stress	4.445

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.415
DRR006520	Root Summer glycyrrhizin high producing strain	6.604
DRR006521	Root Winter glycyrrhizin high producing strain	0.496
DRR006522	Root Winter glycyrrhizin high producing strain	0.516
DRR006523	Root Summer glycyrrhizin low producing strain	7.786
DRR006524	Root Summer glycyrrhizin low producing strain	7.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.033
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.924

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.453
SRR2868004	Drought Stress (root)	26.677
SRR2967015	Control (root)	30.989

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.061
SRR9715740	Leaf	0.430
SRR9715741	Leaf	0.420
SRR9715739	Root	8.688
SRR9715742	Root	10.136
SRR9715743	Root	9.202

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	62.907
SRR8749028	MeJA induced 9h	58.779
SRR8749029	MeJA induced 9h	31.048
SRR8749030	Uninduced	30.711
SRR8749031	Uninduced	19.366
SRR8749032	Uninduced	13.380

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.580
SRR8400027	Control - Root	23.855