Gene detail

Gene detail information of Glyur000198s00008764

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62840.1	1.00E-42	Phosphoglycerate mutase family protein
NR	XP_002279799.3	1.18E-70	PREDICTED: uncharacterized protein LOC100241599 [Vitis vinifera]
trEMBL	tr\|A0A068UVC9\|A0A068UVC9_COFCA	7.00E-70	Coffea canephora DH200=94 genomic scaffold, scaffold_64 {ECO:0000313\|EMBL:CDP12376.1}

Sequence

Transcript Sequence

>Glyur000198s00008764.1
CTTATATCGTCGTTTGCTGGATGCTGCTGCTATTGATAAGGTTGTTGTAAACCTCCGCCATTAAAATGCGAATACTTTTTTACTAAGAAAATGTTGGCACCAAATCACACGTGTCAAACCCTTTCTCCTTCTCTACCACAACCGTCGTCTCTTCCTCCCAAAACACGCCAACAACCTCCTACTCCATCGCCGCCACCTCCTCCTCAGCACCACTGCATTCACCACCATCTCCTTCAATTTCAATGTCCCTTTTACAACCTCACCGCTCATGTCAGAGCCGGTAGCCGGTGCCCGCGGCCTCTTCCTGATGCCCCCACCGCGCCTTACCAACCGGTATTATCTGGTGAGGGCAGGGGAGTCTGAGTTCGAGAGCATGGGAGTGATCAACACGAACCCTGTGGCGAAGACTTCTGTGGATAGCGGTTTATCTGAAAGGGGGAAGAAGCAAGCGATCAGAGCAGCTTTTGATTTGAAAGAAATGGGTGCGTGTGACAATAGCTGTTGGATCTGGCCTGCTATTACTCAGAGAGCTTACCAGACCGCTGAGATTATTGCTTCTGTTAATGCAGTTACTCGAAGAAAATGTTGGCACCAAATCACACGTGTCAAACCCTTTCTCCTTCTCTACCACAACCGTCGTCTCTTCCTCCCAAAACACGCCAACAACCTCCTACTCCATCGCCGCCACCTCCTCCTCAGCACCACTGCATTCACCACCATCTCCTTCAATTTCAATGTCCCTTTTACAACCTCACCGCTCATGTCAGAGCCGGTAGCCGGTGCCCGCGGCCTCTTCCTGATGCCCCCACCGCGCCTTACCAACCGGTATTATCTGGTGAGGGCAGGGGAGTCTGAGTTCGAGAGCATGGGAGTGATCAACACGAACCCTGTGGCGAAGACTTCTGTGGATAGCGGTTTATCTGAAAGGGGGAAGAAGCAAGCGATCAGAGCAGCTTTTGATTTGAAAGAAATGGACGGTATATCCCCAAAGATCAAACCTCCTCCCATTGATGACGGAACCCCAAATGAGAGTGTTTCAGATGTTTTTGTTCGTGTGACCCAACTCATGTCCATTCTTGAAACCCAGTACTTTGGGGACACAGTCGTTATAGTCTCTCCAGATTCTGACAACTTGTCAATACTTCAGGCTGGTTTGATAGGACTAGACTTGCGAAGACACAGGGACCTGTCTTTCACACCCGGTGAAGTTCGCTTNGTTGATACCAATGATATTCCTACTTACAAGCCGCCTGCGTCTGCNAAAAATGGATATTGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00198	254562	258495	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000198s00008764.1	PF00300.17	His_Phos_1	23	102	3.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.382
SRR1783600	control	2.562
SRR1783602	moderate drought stress	2.915
SRR1811619	moderate drought stress	2.737

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.431
DRR006520	Root Summer glycyrrhizin high producing strain	9.301
DRR006521	Root Winter glycyrrhizin high producing strain	2.204
DRR006522	Root Winter glycyrrhizin high producing strain	2.507
DRR006523	Root Summer glycyrrhizin low producing strain	10.540
DRR006524	Root Summer glycyrrhizin low producing strain	10.056
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.245
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.866

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.779
SRR2868004	Drought Stress (root)	11.741
SRR2967015	Control (root)	11.376

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.796
SRR9715740	Leaf	29.749
SRR9715741	Leaf	33.476
SRR9715739	Root	6.406
SRR9715742	Root	7.898
SRR9715743	Root	8.886

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.670
SRR8749028	MeJA induced 9h	6.151
SRR8749029	MeJA induced 9h	5.123
SRR8749030	Uninduced	6.294
SRR8749031	Uninduced	2.307
SRR8749032	Uninduced	2.505

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.442
SRR8400027	Control - Root	10.359