Gene detail information of Glyur000198s00008760 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36330.1 | 4.00E-40 | Uncharacterised protein family (UPF0497) |
| NR | XP_004508862.1 | 1.59E-143 | PREDICTED: CASP-like protein At5g62820-like [Cicer arietinum] |
| Swissprot | tr|D7MMW4|CSPLJ_ARALL | 6.00E-70 | CASP-like protein 4A2 |
| trEMBL | tr|G7JPT7|G7JPT7_MEDTR | 6.00E-134 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00198 | 223349 | 224652 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000198s00008760.1 | PF04535.7 | DUF588 | 137 | 249 | 1.70E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.050 |
| SRR1783600 | control | 24.360 |
| SRR1783602 | moderate drought stress | 49.569 |
| SRR1811619 | moderate drought stress | 48.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 134.064 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 130.589 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.517 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.322 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 146.475 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 146.492 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.399 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.837 |
| SRR2868004 | Drought Stress (root) | 37.432 |
| SRR2967015 | Control (root) | 48.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 65.693 |
| SRR9715740 | Leaf | 88.060 |
| SRR9715741 | Leaf | 62.558 |
| SRR9715739 | Root | 144.118 |
| SRR9715742 | Root | 124.683 |
| SRR9715743 | Root | 124.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.047 |
| SRR8749028 | MeJA induced 9h | 26.805 |
| SRR8749029 | MeJA induced 9h | 35.971 |
| SRR8749030 | Uninduced | 23.675 |
| SRR8749031 | Uninduced | 6.582 |
| SRR8749032 | Uninduced | 12.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.413 |
| SRR8400027 | Control - Root | 41.384 |