Gene detail

Gene detail information of Glyur000198s00008758.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62400.1	1.00E-109	Protein kinase superfamily protein
NR	KHN18460.1	0	Serine/threonine-protein kinase HT1 [Glycine soja]
COG	YP_001958461.1	2.00E-38	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	4.00E-134	Serine/threonine-protein kinase HT1
trEMBL	tr\|K7MKQ8\|K7MKQ8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G09770.2}

Sequence

Transcript Sequence

>Glyur000198s00008758.1
CCCGGTTTGTCTCCTCACAAGTATGTTATGTATCCTCACGTTTAGGAACGTAGATGGTAGTGTCTGTCAGTGTTATTGGAAAGAGGTGCCAACACCCAGCTCTCTCTTTGCGATGCATTTCCCCTTTCACTGCTCACCACAAAAACNCCATTCCACAATAACTTTACTACTTCTAGGTTCTAACCCATTCTCTCCCCTCCATCCTCATCTTCAAATCAAATCTCTATCTCTTTTTATTATTAGGATTCGTTAACAAAAGGGACCAAACCTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCTCTCTCTCTTTACCTCTTCTCCTGTTGGGTGACGAAATACCAAAGATCATTGTGTTTTCATTGGTTCCATGCTTTACTAATAAGGAATAAGTATAACATAATTCTGGTTTACACGATTACAAAAAGAAGAGAATGGGGTGGTTTGCAGTTGGTTTCTTATTATTTTTCCTTTCTCCTTTTTCTAAATCCACAAGTAATGAGAGATACTCAAAATGGAGTTAGAGTTAGCTCAGTAACTGTTTCGAAAATCAAGGTTTTTTCCAACTGGGTATCCTTCAAATTAATGCTGCTGCATTTGTTTAAAGCTTTAGTCTAATTTTGGGAGTCTGCGTTGGGTCTAATATACGGGGTTGAAAATTTGATGATTTCAATAAGAAGAACTAACTCCAAAAAATGAAGAACTTTTACTGGTTTAAAGAGATTTCAAACAATGTGAGGTCAGGGAGAAGACTGTCTCTAGGGGAATACAAGAGAGCAGTGTCATGGTCAAAGTACTTGNTCTCTTCAGGGGCGGCCATAAAGGGAGATGGAGAAGAGGATTGGAGTGCTGATTTGTCTCAGCTATTCATAGGGTCCAAGTTTGCCTCCGGGAGACACAGCAGGATCTACAGAGGCATCTACAAGCACATGGATGTTGCAATTAAGCTTGTGAGTCAACCAGAGGAAGATGAGGACTTGGCTGTTTTGCTTGAGAAGCAGTTCACTTCTGAGGTTGCTTTGCTCTTTCGTTTGCGCCATCCAAATATCATTACTTTTGTTGGAGCTTGCAAGAGACCTCCAGTCTTCTGTATAATTACTGAATATCTGGCTGGGGGGTCATTGAGAAAATACCTGCATCAGCAAGGACCCCATTCAGTTCCTCTCAAACTTGTGCTGAAACTAGCACTAGACATTGCAAGGGGAATGCAATTCCTTCACTCTCAGGGAGTCCTTCATAGGGATCTCAAATCAGAAAATCTGCTGTTGGGTGAGGACATGTGTGTCAAAGTGGCAGATTTTGGTATCTCGTGCTTGGAATCCCAGTGTGGCAGTGCCAAAGGATTCACAGGGACTTACCGTTGGATGGCACCTGAAATGATCAAAGAAAAGAGTCACACCAAGAAAGTAGATGTCTATAGTTTTGCCATAGTTCTATGGGAGCTTCTAACAGGACTGACACCATTTGACAACATGACACCAGAACAGGCAGCATATGCAGTGACCCACAAGAATGCAAGGCCTCCATTACCATCTGATTGTCCATGGGCATTTAGTCACCTCATGAACAGATGCTGGTCAAGCAATCCAGATAAAAGGCCACATTTTGATGAGATAGTCTCAATTTTGGAGAGCTATACTGAATCACTTGAGCAGGATCCAGAATTTTTCTCTACTTTCAAACCACGTCCAAGTAATATAATTCTGAAATGCTTNCCAAAATGTAATTCTGGCCATAACCCATAAGTCTGCTTCTTCATGCAAAGCTTANGATTCTCTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00198	212158	215543	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000198s00008758.1	PF07714.12	Pkinase_Tyr	59	311	1.60E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.543
SRR1783600	control	1.603
SRR1783602	moderate drought stress	2.980
SRR1811619	moderate drought stress	2.946

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.722
DRR006520	Root Summer glycyrrhizin high producing strain	8.424
DRR006521	Root Winter glycyrrhizin high producing strain	0.511
DRR006522	Root Winter glycyrrhizin high producing strain	0.487
DRR006523	Root Summer glycyrrhizin low producing strain	2.723
DRR006524	Root Summer glycyrrhizin low producing strain	2.849
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.801
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.686

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.037
SRR2868004	Drought Stress (root)	0.699
SRR2967015	Control (root)	1.187

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.416
SRR9715740	Leaf	1.817
SRR9715741	Leaf	1.008
SRR9715739	Root	0.794
SRR9715742	Root	1.637
SRR9715743	Root	0.753

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.109
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.992
SRR8400027	Control - Root	3.973