Gene detail information of Glyur000198s00008756 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27500.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004501933.1 | 0 | PREDICTED: uncharacterized protein LOC101499391 [Cicer arietinum] |
| COG | YP_003890300.1 | 8.00E-22 | hypothetical protein Cyan7822_5141 [Cyanothece sp. PCC 7822] |
| trEMBL | tr|G7JNV9|G7JNV9_MEDTR | 0 | Kinesin light chain {ECO:0000313|EMBL:AES91162.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00198 | 200841 | 203543 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000198s00008756.1 | PF13181.1 | TPR_8 | 276 | 301 | 0.02 |
| Glyur000198s00008756.1 | PF00515.23 | TPR_1 | 401 | 427 | 0.0016 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.591 |
| SRR1783600 | control | 2.597 |
| SRR1783602 | moderate drought stress | 1.499 |
| SRR1811619 | moderate drought stress | 1.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.186 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.206 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.698 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.614 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.191 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.274 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.549 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.190 |
| SRR2868004 | Drought Stress (root) | 1.764 |
| SRR2967015 | Control (root) | 1.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.000 |
| SRR9715740 | Leaf | 1.609 |
| SRR9715741 | Leaf | 1.710 |
| SRR9715739 | Root | 0.092 |
| SRR9715742 | Root | 2.600 |
| SRR9715743 | Root | 2.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.755 |
| SRR8749028 | MeJA induced 9h | 3.162 |
| SRR8749029 | MeJA induced 9h | 1.520 |
| SRR8749030 | Uninduced | 2.442 |
| SRR8749031 | Uninduced | 1.937 |
| SRR8749032 | Uninduced | 1.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.126 |
| SRR8400027 | Control - Root | 4.336 |